BAC Information

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BAC

Clone NameMSMg01-334G09
Chromosome10 (Build37)
Map Location 33,897,490 - 33,897,872
singlet/doubletsinglet
Overlap geneDse
Upstream geneTrdn, A330019N05Rik, LOC100040686, EG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik
Downstream geneTspyl1, Tspyl4, Nt5dc1, Col10a1, Frk, LOC667824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334G09.T7 (MSMg01no334_g09.b1)MSMg01-334G09.TJ (MSMg01no334_g09.g1)
ACCAG449905AG449906
length761730
length of high quality
(start - end)
249 (77 - 325)383 (55 - 437)
definitionCHROMAT_FILE: MSMg01no334_g09.b1 PHD_FILE: MSMg01no334_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:49 2005CHROMAT_FILE: MSMg01no334_g09.g1 PHD_FILE: MSMg01no334_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGTACCGAGGA
ATCACTAGNTATGTTTCANAAAAGAACAACTAAGATATCATGCTAATTTG
CATAAGAGTAAACATTTTATAGATCCTGTTCCCAATAACATTTCAGATAG
TCAAAAGTTGGGCCAGTAAGATGGCTCAATATTTAATAGAGTAGACACTT
GCTGTCAAGCCTGACAACCTGAATTTGGCCACAAGAACTCAAAACTAGTT
TCCATATGTTGTACTTTCTTATTTGTACCACACACACACACACACGCACG
CATACTCACTGAAATATACAATTTTCATCTTTCTTGTGACGGTTTGTATA
TTCTTGGGCCAGGGAGTGTTATCATTCGCAGGTGTGACCTGGTTGGAGTA
TGTATGTCACTATGGGTGTGGGCTTAAGACCCTCACCCTAGTTGCTTGGA
AGTCCGTCTTCCACTATCAGACTTTGGATGAAGACTTATAACTCTCAACT
CTGCCTGTGCCATGCCTGCCTGGATACTGCCATGCTCCTACCTTGATGAT
AATGGACTGAACCTCTGAACCTGTAAGCCATGCACAATTAAATGTTTGTT
TTTGTAAAACCTTGCCTTGGCCATGGTGTCCGTTCTCAGAAGTATAAAAC
CTAACCAAAAAAAAATTGCTTTAATTATGTGCCAGTTTCTCTTTTCATCG
AATAAAAGTTTAATTTTTAGCCCGGAAAGATCTCTTTCATTATTTCGAAC
GCCCCTCCCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCAA
AAACCCCACCTAGGGGAAAACATGGCTGGCCAAATCATGAATCTATCTCC
TCCACCCTTATTCCTTCATCTCTGCAGGTTTAGTGAAATGTGCTAAGGAA
AGGCTCCGTTAAGGGAATCTATGCATGAGCCAAACAACCTACTCCCTGTT
CTCCTTCCAGTGCCGTGTGAAAGCATCAACATCCTTCATCACCCACACTG
AAGGATGTTTATGAGAGTACTGAGTCTCTGTGAAAATCTAGAAGGTTCTT
TGTGATCTTTGGTCCAAGAATAATTGTTCTTTTATAGAGTAACTGACCTG
ATTTTTTATTCTCATGGACACTGTAAACTTCAAAACTGAGGAAGCCTATC
ATTTTGTTGCTAAATAAATAAAACAAAGCAATCTCAGGGCCCACATGTGA
TCCACTCGTGGTCATGTTGTGTGATACATTTTAGTGAATCTCACTATTCT
TCTCCCAAGCCATTTCCCAACTCTTTCTCAGATACTTTCTCTTCTCTTCT
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCACTTCACTTCC
CTTCACATCTCTTCACCTTCATTCCTTCTTAAAAAGATTTATTTGTTCGT
TTATTTAACTACCTAATGTCTTGTGACATTTTCCACCCCTTTCTCCACTA
CTTTTTACCTATCTTCATCTTTTCTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_g09.g1 MSMg01no334_g09.g1 CHROMAT_FILE:
MSMg01no334_g09.g1 PHD_FILE: MSMg01no334_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:49 2005
         (383 letters)



>mm_chr10_33897290_33898072
          Length = 783

 Score =  717 bits (371), Expect = 0.0
 Identities = 380/383 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccacctaggggaaaacatggctggccaaatcatgaatctatctcctccacccttattcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 cccacctaggggaaaacatggctggccaaatcatgaatctatctcctccacctttattcc 260

                                                                       
Query: 61  ttcatctctgcaggtttagtgaaatgtgctaaggaaaggctccgttaagggaatctatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcatctctgcaggtttagtgaaatgtgctaaggaaaggctccgttaagggaatctatgc 320

                                                                       
Query: 121 atgagccaaacaacctactccctgttctccttccagtgccgtgtgaaagcatcaacatcc 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 atgagccaaacaacctactccctgttctccttccagtgtcgtgtgaaagcatcaacatcc 380

                                                                       
Query: 181 ttcatcacccacactgaaggatgtttatgagagtactgagtctctgtgaaaatctagaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcatcacccacactgaaggatgtttatgagagtactgagtctctgtgaaaatctagaag 440

                                                                       
Query: 241 gttctttgtgatctttggtccaagaataattgttcttttatagagtaactgacctgattt 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttctttgtgatctttgggccaagaataattgttcttttatagagtaactgacctgattt 500

                                                                       
Query: 301 tttattctcatggacactgtaaacttcaaaactgaggaagcctatcattttgttgctaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttattctcatggacactgtaaacttcaaaactgaggaagcctatcattttgttgctaaa 560

                                  
Query: 361 taaataaaacaaagcaatctcag 383
           |||||||||||||||||||||||
Sbjct: 561 taaataaaacaaagcaatctcag 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)