Query= MSMg01no334_h03.b1 MSMg01no334_h03.b1 CHROMAT_FILE:
MSMg01no334_h03.b1 PHD_FILE: MSMg01no334_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:52 2005
(482 letters)
>mm_chr10_19854377_19855258
Length = 882
Score = 818 bits (423), Expect = 0.0
Identities = 468/483 (96%), Gaps = 4/483 (0%)
Strand = Plus / Plus
Query: 1 cacactactactactactcatgaacacacacaaatacatacacatgcataaatcttcagc 60
||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 203 cacac-ac-actactactcatgaacatacacaaatacatacacatgcataaatcttcaga 260
Query: 61 ttataattattagaattgctgatgaagctaagtcagctctgcccagaagcccaccttgcg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 ttataattattagaattgctgatgaagctaagtcagctctgcccagaagcccacctcgcg 320
Query: 121 gctgtgcgtacctgaggtgggaggcatgtcgctccgttctgaagcagaaaggaagact-t 179
|||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| | |
Sbjct: 321 gctgtgcgtacctgaggtgggaggcatgtcactccgttctgaagaagaaaggtaga-tat 379
Query: 180 ctcagccttacacgttatttccctcctacctagcatgtggtgacactgaacccctgggct 239
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctcatccttacacgttatttccctcctacctagcatgtggtgacactgaacccctgggct 439
Query: 240 aactgcacaggggtgagtggtcttaaagctggccttggaacagttgaggtggccttgcaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aactgcacaggggtgagtggtcttaaagctggccttggaacagttgaggtggccttgcaa 499
Query: 300 gcctgtgtttccagtgttatgttcaaaagggaactgtgcagctaaaataaattccaagaa 359
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 500 gcctgtgtttccagtgttatgttcaaaagggaactctgcagctaaaataaattccaagaa 559
Query: 360 atgcctgtgtccttgagagggcaatagcgatatgccaacacttttctatagggctgtaag 419
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 560 atgcctgtgtccttgagagggcaatagcgatatgccagcacttttctatagggctgtaag 619
Query: 420 tcggcaggctagacaaagatacattccagaccaaaaatcactcattgaaaatccatccag 479
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcgtcaggctaggcaaagatacattccagaccaaaaatcactcattgaaaatccatccag 679
Query: 480 tag 482
|||
Sbjct: 680 tag 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_h03.g1 MSMg01no334_h03.g1 CHROMAT_FILE:
MSMg01no334_h03.g1 PHD_FILE: MSMg01no334_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:53 2005
(244 letters)
>mm_chr10_19995133_19995776
Length = 644
Score = 456 bits (236), Expect = e-133
Identities = 242/244 (99%)
Strand = Plus / Minus
Query: 1 agtcctacttagaaggctgtgatttcacaaatagaggcccacggtgtgtgtcctgagctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agtcctacttagaaggctgtgatttcacaaatagaggcccacggtgtgtgtcctgagctt 385
Query: 61 cactacataagctgctactcaacgctggagtccagcttaaggcaacctatagacatctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cactacataagctgctactcaacgctggagtccagcttaaggcaacctatagacatctga 325
Query: 121 ctcaaacctagggttggctatattgaaagtcttataacacttgatagcacctgtcagcag 180
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 324 ctcaaacctagggtgggctatattgaaagtcttataacccttgatagcacctgtcagcag 265
Query: 181 taacgctcttggaaataccacgttatgcagtgggcctgggggtgctggtgctcttgaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taacgctcttggaaataccacgttatgcagtgggcctgggggtgctggtgctcttgaatg 205
Query: 241 gttg 244
||||
Sbjct: 204 gttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
