Query= MSMg01no335_b18.b1 MSMg01no335_b18.b1 CHROMAT_FILE:
MSMg01no335_b18.b1 PHD_FILE: MSMg01no335_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:45 2005
(609 letters)
>mm_chr10_73193230_73194239
Length = 1010
Score = 911 bits (471), Expect = 0.0
Identities = 530/555 (95%), Gaps = 13/555 (2%)
Strand = Plus / Minus
Query: 4 ggaattctagatggatac-cacagatggagttgaatttaaacatagccttgacttctagc 62
|||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 554 ggaattctagatggatacacacagatggagttgaatttaaatatagccttgacctctagc 495
Query: 63 atcttttttgaacctttaaaaggcacttgaaaaatgaggaagccctctatcatcagtgat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 atcttttttgaacctttaaaaggcacttgaaaaatgaggaagccctctatcatcagtgat 435
Query: 123 ggtttcacatggctttgatatgtttggtctttcttcagggtagaaatgagttcatggttc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ggtttcacatggctttgatatgtttggtctttcttcagggtagaaatgagttcatggttc 375
Query: 183 attgtcctgtgtgttcagaaacttagcaggacacctgaggagctgttcagcaaggtctct 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 attgtcctgtgtgttcagaaacttagcaggacacctgaggagctgttcagcaaggtctct 315
Query: 243 aagaattaaaaaggcataacacacagacctgcctcccctgtgggagggaaatgtgacaag 302
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 314 aagaattaaaaaggcatgacacacagacctgcctccccagtgggagggaaatgtgacgag 255
Query: 303 gggggttgccttctctgagccttaaggcatc-tgcggtaggtttctacaggaaatcacct 361
|||||||||||||||||||| |||||||| | ||| ||||||||||||||||||||||||
Sbjct: 254 gggggttgccttctctgagctttaaggca-cgtgcagtaggtttctacaggaaatcacct 196
Query: 362 tcctaatatcccaattaatgtatctggtaattgacttcatcttcaactctgttttgtgac 421
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 195 tcctaatatcccaattaatgtatctgctaattgacttcatcttcaactctgttttgtgac 136
Query: 422 catggaaattgatgtaactgcttctacactggtatgtgtccttttagatcaactgaatct 481
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 135 catggaaattgatgtaactgcttctacactggtatgtgtccttttaggtcaactgaatct 76
Query: 482 acattttccggccaggat---------tagcagtgagatggtattttcaatactgaacaa 532
||||| || ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 75 acattctctggccaggatcatttgtattagcagtgagatggtattttcaatactgaacaa 16
Query: 533 aaattattga-tttt 546
|||||| ||| ||||
Sbjct: 15 aaattactgactttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1010
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1000
Effective search space: 599000
Effective search space used: 599000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_b18.g1 MSMg01no335_b18.g1 CHROMAT_FILE:
MSMg01no335_b18.g1 PHD_FILE: MSMg01no335_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:45 2005
(569 letters)
>mm_chr10_73008850_73009818
Length = 969
Score = 1048 bits (542), Expect = 0.0
Identities = 564/573 (98%), Gaps = 4/573 (0%)
Strand = Plus / Plus
Query: 1 atgatttgatgacaagtgattgaatatctgagccatctccctgccgcacattttcattta 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 atgatttgatgacaagtgcttgaatatctgagccatctccctgccgcacattttcattta 256
Query: 61 ataataattaataagcataatttaatggattagtgctcaaataatatactcatgtgtatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ataataattaataagcataatttaatggattagtgctcaaataatatactcatgtgtatt 316
Query: 121 acataggcccccaggcagtcttttaatcaagaataactttctttttgttcagtaaagatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 acataggcccccaggcagtcttttaatcaagaataactttctttttgttcagtaaagatt 376
Query: 181 ttgattttataaataatctgaagctatcacaaatttcccaaagaacagtgctcactgaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttgattttataaataatctgaagctatcacaaatttcccaaagaacagtgctcactgaga 436
Query: 241 tagttgagcagttacagact-gatgtcttttcctctaaagtaattcagagaacattttct 299
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tagttgagcaattacagactagatgtcttttcctctaaagtaattcagagaacattttct 496
Query: 300 ataaatcagcacacttttgtgtagatctgtaatcgatcatcaaaatcccattcatatgtc 359
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 497 ataaatcagcacacttttgtgtagatctgtaattgatcatcaaaatcccattcatatgtc 556
Query: 360 aaggaaaagaaagtcatgaaatttacaggtaaatggaaaatat---actgaatgaggtaa 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 557 aaggaaaagaaagtcatgaaatttacaggtaaatggaaaatattatactgaatgaggtaa 616
Query: 417 cccagacccagcaggtaaagacatgagtgttgatatattacaaacacctaaaaatcaaat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cccagacccagcaggtaaagacatgagtgttgatatattacaaacacctaaaaatcaaat 676
Query: 477 gcttttgatgtgttgtgtttaattgtgtttctacattaacatgagcatgtgctcttccta 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gcttttgatgtgttgtgtttaattgtgtttctacattaacatgagcatgtgctcttccta 736
Query: 537 cacctctgtggntcacaggagtaggaacttagt 569
||||||||||| ||||||||||||||| |||||
Sbjct: 737 cacctctgtggttcacaggagtaggaatttagt 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
