Query= MSMg01no335_d10.b1 MSMg01no335_d10.b1 CHROMAT_FILE:
MSMg01no335_d10.b1 PHD_FILE: MSMg01no335_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:54 2005
(376 letters)
>mm_chr10_18082210_18082985
Length = 776
Score = 607 bits (314), Expect = e-178
Identities = 352/370 (95%), Gaps = 10/370 (2%)
Strand = Plus / Plus
Query: 10 gttatttaaccaatcaaacagttagggagctagattttagttctcagcccctccccctac 69
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gttatttagccaatcaaacaattagggagctagattttagttctcagcccctccccctac 269
Query: 70 acttattttgtaatttcccttgggcagcccatgccctcacctccttgtgtctaggtgctg 129
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 270 acttattttgtaatttcccttgggcagcccatgccctcacctccttgtacctaggtgctg 329
Query: 130 ccttagcctcccttagaatccctccacgccttacgccctctttctcccacagttctcttc 189
||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 330 ccttagcctcccttagagtccctccactcattacgccctctttctcccacagttctcttc 389
Query: 190 ttcgcttcactctagccagtttcaacctttaaagcatcgttgtgttttttaggtttt--- 246
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ttcgcttcactctagccagtttcaacctttaaagcatcgttgtgttttttaggtttttag 449
Query: 247 gtttttttctttctttctttttcttttgagaacaggcttaatgtatcccaggctggcctt 306
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gtttt-------ctttctttttcttttgagaacaggcttaatgtatcccaggctggcctt 502
Query: 307 gaactacctgtgtggctaagaatgccttggaagcttcgattctcctttccacttgccaag 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaactacctgtgtggctaagaatgccttggaagcttcgattctcctttccacttgccaag 562
Query: 367 tccggagatt 376
||| ||||||
Sbjct: 563 tcccgagatt 572
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space: 281489
Effective search space used: 281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_d10.g1 MSMg01no335_d10.g1 CHROMAT_FILE:
MSMg01no335_d10.g1 PHD_FILE: MSMg01no335_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:54 2005
(547 letters)
>mm_chr10_18267566_18268511
Length = 946
Score = 953 bits (493), Expect = 0.0
Identities = 534/548 (97%), Gaps = 3/548 (0%)
Strand = Plus / Minus
Query: 1 tcacatctacaaagcaagttgtatatacacaaaatacttacagg-aaactggagaggatg 59
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 746 tcacatctacaaagcaagttgtatatacacaaaatacttacaggaaaactggagaggatg 687
Query: 60 caggtaaatagagtatcanatggttcaagaacaacttagcagttcacaagaacctgtata 119
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 caggtaaatagagtatcaaatggttcaagaacaacttagcagttcacaagaacctgtata 627
Query: 120 caatttgtatcctctccctttctccccccccctccttcctccaccctttcctacacaaaa 179
||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||
Sbjct: 626 caatttgtatcctctccctctc-ccccccccctccttcctccacccttccctacacaaaa 568
Query: 180 gctgacaatagtccaaagttgaaacaatacaaatcatcatacattgataaacaaactgct 239
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gctgacaatagtcc-aagttgaaacaatacaaatcatcatacattgataaacaaactgct 509
Query: 240 tataaaaatccttatttgaccattaaaaaatgtgcatgacatgcatgaaccctgaagata 299
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 508 tataaaaatccttatttgaccattaaaaaatgtgtatgacatgcatgaaccctgaagata 449
Query: 300 ctttaagcaaaggcagttagtcacacagagcatcccacagtgtggttcttctatataaag 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 448 ctttaagcaaaggcagttagtcacacagagcatcccacagtgtggttcttctatatgaag 389
Query: 360 tgtctgagcgctaggtgtggactcagtaaatctgggacacttttacaccatcctggctct 419
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tgtctgagcgctaggcgtggactcagtaaatctgggacacttttacaccatcctggctct 329
Query: 420 ttgacattttctagagatgacccgtggtcaatcagcaggatgggaggtacagggtaggta 479
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 328 ttgacattttctagagatgacccgtggtcaatcagcaggatgggaggtgcagggtgggta 269
Query: 480 ggcccctctgttttattttggttttggtttccaatcaaatcacaaagataagttcaagtt 539
|||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 268 ggcccctctgctttattttgtttttggtttccaatcaaaccacaaagataagttcaagtt 209
Query: 540 actagttt 547
||||||||
Sbjct: 208 actagttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 946
Length adjustment: 10
Effective length of query: 537
Effective length of database: 936
Effective search space: 502632
Effective search space used: 502632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
