BAC Information

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BAC

Clone NameMSMg01-336C16
Chromosome10 (Build37)
Map Location 89,571,439 - 89,741,074
singlet/doubletdoublet
Overlap geneAnks1b, LOC544719
Upstream geneTmem16d, Gas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, LOC100043039
Downstream geneApaf1, 1200009F10Rik, Slc25a3, Tmpo, LOC100041769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336C16.T7 (MSMg01no336_c16.b1)MSMg01-336C16.TJ (MSMg01no336_c16.g1)
ACCAG451252AG451253
length740732
length of high quality
(start - end)
545 (43 - 587)607 (68 - 674)
definitionCHROMAT_FILE: MSMg01no336_c16.b1 PHD_FILE: MSMg01no336_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:10 2005CHROMAT_FILE: MSMg01no336_c16.g1 PHD_FILE: MSMg01no336_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,571,439 - 89,571,977)(89,740,468 - 89,741,074)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGTATTTACCCTATGCCTTCGCCACTGTTGCACTTTTTCGGGACTGTT
ATTTTGTGTTCTTGCTTTACCCATCCACAGATAAAAAGATAATTTGTTTT
AAAACACATTTTACCCAGAGCAACATCCCTGGATAGTTTAGATAATAACA
TTTGGGATGTTAGAGGGGATGAAGTGTAGATGACATTTTTTATTGAATTG
GTCTTAGGTCAGGCTGGGACACCTAGGGCCCTTTTCTTCTTAACATGTTG
GCTTCTTACCTTCTTACTGTCCACTTAGAAAGACCCTGTGACTACACCGA
GTGTCATAGAGATCAGAATGATCTTTTCGTGTGTGCCTACGTCTGTTTTT
TGTTTGTTTGTTTGTTTGTTTTTTGTTTGTTTTTTGTTTTTGCCACACAA
GGTCAACATTCACAGGTTCTGATGAAGGTGCTCCTCTTCGGAAGGCTAAC
ATTCAATCCCAAGCCCTGCATTGGCTAAGTAAACTGCACTGTTCTTTTCA
ACGGCAAAATGGAATGCATTATTGACAAGCTGAGGAGATTATTTTTTGAG
AGACAATATTTCAAGTTAAGCATGTACTGCACAATTTCGCCAACCTAAAA
TTCTTATAAAAGGAAATTACCCTGTGGTCACCAAGGCCAATGGGTGTCTG
CCTTGAGGGAAAAGAAAAGGGTCGGGAAAAAAAAAATTGN
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTCTATAGAGCAAACTGGCCTTGAAATCAGAG
AACCACCTGTCTCTGCCTTCTTAGTGCTAGGATTAAAGGTGAGGGCCCCC
ACACTATTTTATGTAAGTCTTACAAACCTACTGAGCCTGGAGGCCCAGAA
TCTTTGACAGATGCTGATGGGACAGATGGATGAGTGAATGGTTGTGTGGA
AAGGGAACATTCCAAAGGGCAAGAACAAACGCTGACAAAGATCTAGGATG
TACGTATGCAAAGTGGCAGATGACCTTTCAGTGAATCTTCATTCCTTTCA
ACAAGTTACTCGTTATTTTGCCCAATTGCACTATTACACATTTTTAGACC
AATGTGATGAGCTGAGACATTTGTAAATACATTGCTTTCTTAACTGAGGA
AAACTAAATAATGAAATAGTTTTAATTCTCGATTTTAAAAAACTATTTAA
GGAGAAAATTAATACCAAAAAACTATAATTTTATCTTTCCCATATTTTAA
AAAATTGCTTCAGGACCATTAANAGAACAATCTAGTTTGCATTTCTCAAT
TTTGTGTATTCTAATATGAATATAAAATGCAATTCACTGGATAGAATCTT
GAATACNATAAGAACTGATAAAAAAATTTTCCCATTTAAATGTACAGTGT
AAGTGAAGCTGTATGTCAGCTAATTTGGTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_c16.b1 MSMg01no336_c16.b1 CHROMAT_FILE:
MSMg01no336_c16.b1 PHD_FILE: MSMg01no336_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:10 2005
         (545 letters)



>mm_chr10_89571236_89572180
          Length = 945

 Score =  980 bits (507), Expect = 0.0
 Identities = 533/543 (98%), Gaps = 5/543 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtatttaccctatgccttcgccactgttgcactttttcgggactgttatttt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtatttaccctatgccttcgccactgttgcactttttcgggactgttatttt 263

                                                                       
Query: 64  gtgttcttgctttacccatccacagataaaaagataatttgttttaaaacacattttacc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgttcttgctttacccatccacagataaaaagataatttgttttaaaacacattttacc 323

                                                                       
Query: 124 cagagcaacatccctggatagtttagataataacatttgggatgttagaggggatgaagt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagagcaacatccctggatagtttagataataacatttgggatgttagaggggatgaagt 383

                                                                       
Query: 184 gtagatgacattttttattgaattggtcttaggtcaggctgggacacctagggccctttt 243
           ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 384 gtagatgacattttttattgaattggtcttaggtcagactgggacacccagggccctttt 443

                                                                       
Query: 244 cttcttaacatgttggcttcttaccttcttactgtccacttagaaagaccctgtgactac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cttcttaacatgttggcttcttaccttcttactgtccacttagaaagaccctgtgactac 503

                                                                       
Query: 304 accgagtgtcatagagatcagaatgatcttttcgtgtgtgcctacgtctgttttttgttt 363
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 504 actgagtgtcatagagatcagaatgatcttttcgtgtgtgcctacgtctgtttttt---t 560

                                                                       
Query: 364 gtttgtttgtttgttttttgtttgttttttgtttttgccacacaaggtcaacattcacag 423
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 gtttgtttgtttgttttttgtttgttttttgtttttgccacacaaagtcaacattcacag 620

                                                                       
Query: 424 gttctgatgaaggtgctcctcttc-ggaaggctaacattcaatcccaagccctgcattgg 482
           |||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||
Sbjct: 621 gttctgatgaaggtgctcctct-ctggaaggctaacattcaatcccaagccctggattgg 679

                                                                       
Query: 483 ctaagtaaactgcactgttcttttcaacggcaaaatggaatgcattattgacaagctgag 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctaagtaaactgcactgttcttttcaacggcaaaatggaatgcattattgacaagctgag 739

              
Query: 543 gag 545
           |||
Sbjct: 740 gag 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no336_c16.g1 MSMg01no336_c16.g1 CHROMAT_FILE:
MSMg01no336_c16.g1 PHD_FILE: MSMg01no336_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:10 2005
         (607 letters)



>mm_chr10_89740167_89741173
          Length = 1007

 Score = 1139 bits (589), Expect = 0.0
 Identities = 602/607 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctatagagcaaactggccttgaaatcagagaaccacctgtctctgccttcttagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 actctatagagcaaactggccttgaaatcagagaaccacctgtctctgccttcttagtgc 849

                                                                       
Query: 61  taggattaaaggtgagggcccccacactattttatgtaagtcttacaaacctactgagcc 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 848 taggattaaaggtgagggcccccacactattttatgtgagtcttacaaacctactgagcc 789

                                                                       
Query: 121 tggaggcccagaatctttgacagatgctgatgggacagatggatgagtgaatggttgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 tggaggcccagaatctttgacagatgctgatgggacagatggatgagtgaatggttgtgt 729

                                                                       
Query: 181 ggaaagggaacattccaaagggcaagaacaaacgctgacaaagatctaggatgtacgtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ggaaagggaacattccaaagggcaagaacaaacgctgacaaagatctaggatgtacgtat 669

                                                                       
Query: 241 gcaaagtggcagatgacctttcagtgaatcttcattcctttcaacaagttactcgttatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gcaaagtggcagatgacctttcagtgaatcttcattcctttcaacaagttactcgttatt 609

                                                                       
Query: 301 ttgcccaattgcactattacacatttttagaccaatgtgatgagctgagacatttgtaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ttgcccaattgcactattacacatttttagaccaatgtgatgagctgagacatttgtaaa 549

                                                                       
Query: 361 tacattgctttcttaactgaggaaaactaaataatgaaatagttttaattctcgatttta 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tacgttgctttcttaactgaggaaaactaaataatgaaatagttttaattctcgatttta 489

                                                                       
Query: 421 aaaaactatttaaggagaaaattaataccaaaaaactataattttatctttcccatattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aaaaactatttaaggagaaaattaataccaaaaaactataattttatctttcccatattt 429

                                                                       
Query: 481 taaaaaattgcttcaggaccattaanagaacaatctagtttgcatttctcaattttgtgt 540
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 428 taaaaaattgcttcaggaccattaaaagaacaatctagtttgcatttctcaattttgtgt 369

                                                                       
Query: 541 attctaatatgaatataaaatgcaattcactggatagaatcttgaatacnataagaactg 600
           |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 368 attctaatatgaatataaaatgcaattcactggataaaatcttgaatacaataagaactg 309

                  
Query: 601 ataaaaa 607
           |||||||
Sbjct: 308 ataaaaa 302


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)