Query= MSMg01no336_c16.b1 MSMg01no336_c16.b1 CHROMAT_FILE:
MSMg01no336_c16.b1 PHD_FILE: MSMg01no336_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:10 2005
(545 letters)
>mm_chr10_89571236_89572180
Length = 945
Score = 980 bits (507), Expect = 0.0
Identities = 533/543 (98%), Gaps = 5/543 (0%)
Strand = Plus / Plus
Query: 4 ggaattctgtatttaccctatgccttcgccactgttgcactttttcgggactgttatttt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtatttaccctatgccttcgccactgttgcactttttcgggactgttatttt 263
Query: 64 gtgttcttgctttacccatccacagataaaaagataatttgttttaaaacacattttacc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgttcttgctttacccatccacagataaaaagataatttgttttaaaacacattttacc 323
Query: 124 cagagcaacatccctggatagtttagataataacatttgggatgttagaggggatgaagt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagagcaacatccctggatagtttagataataacatttgggatgttagaggggatgaagt 383
Query: 184 gtagatgacattttttattgaattggtcttaggtcaggctgggacacctagggccctttt 243
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 384 gtagatgacattttttattgaattggtcttaggtcagactgggacacccagggccctttt 443
Query: 244 cttcttaacatgttggcttcttaccttcttactgtccacttagaaagaccctgtgactac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cttcttaacatgttggcttcttaccttcttactgtccacttagaaagaccctgtgactac 503
Query: 304 accgagtgtcatagagatcagaatgatcttttcgtgtgtgcctacgtctgttttttgttt 363
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 504 actgagtgtcatagagatcagaatgatcttttcgtgtgtgcctacgtctgtttttt---t 560
Query: 364 gtttgtttgtttgttttttgtttgttttttgtttttgccacacaaggtcaacattcacag 423
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 gtttgtttgtttgttttttgtttgttttttgtttttgccacacaaagtcaacattcacag 620
Query: 424 gttctgatgaaggtgctcctcttc-ggaaggctaacattcaatcccaagccctgcattgg 482
|||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||
Sbjct: 621 gttctgatgaaggtgctcctct-ctggaaggctaacattcaatcccaagccctggattgg 679
Query: 483 ctaagtaaactgcactgttcttttcaacggcaaaatggaatgcattattgacaagctgag 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctaagtaaactgcactgttcttttcaacggcaaaatggaatgcattattgacaagctgag 739
Query: 543 gag 545
|||
Sbjct: 740 gag 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_c16.g1 MSMg01no336_c16.g1 CHROMAT_FILE:
MSMg01no336_c16.g1 PHD_FILE: MSMg01no336_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:10 2005
(607 letters)
>mm_chr10_89740167_89741173
Length = 1007
Score = 1139 bits (589), Expect = 0.0
Identities = 602/607 (99%)
Strand = Plus / Minus
Query: 1 actctatagagcaaactggccttgaaatcagagaaccacctgtctctgccttcttagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 actctatagagcaaactggccttgaaatcagagaaccacctgtctctgccttcttagtgc 849
Query: 61 taggattaaaggtgagggcccccacactattttatgtaagtcttacaaacctactgagcc 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 848 taggattaaaggtgagggcccccacactattttatgtgagtcttacaaacctactgagcc 789
Query: 121 tggaggcccagaatctttgacagatgctgatgggacagatggatgagtgaatggttgtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 tggaggcccagaatctttgacagatgctgatgggacagatggatgagtgaatggttgtgt 729
Query: 181 ggaaagggaacattccaaagggcaagaacaaacgctgacaaagatctaggatgtacgtat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ggaaagggaacattccaaagggcaagaacaaacgctgacaaagatctaggatgtacgtat 669
Query: 241 gcaaagtggcagatgacctttcagtgaatcttcattcctttcaacaagttactcgttatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gcaaagtggcagatgacctttcagtgaatcttcattcctttcaacaagttactcgttatt 609
Query: 301 ttgcccaattgcactattacacatttttagaccaatgtgatgagctgagacatttgtaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ttgcccaattgcactattacacatttttagaccaatgtgatgagctgagacatttgtaaa 549
Query: 361 tacattgctttcttaactgaggaaaactaaataatgaaatagttttaattctcgatttta 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tacgttgctttcttaactgaggaaaactaaataatgaaatagttttaattctcgatttta 489
Query: 421 aaaaactatttaaggagaaaattaataccaaaaaactataattttatctttcccatattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aaaaactatttaaggagaaaattaataccaaaaaactataattttatctttcccatattt 429
Query: 481 taaaaaattgcttcaggaccattaanagaacaatctagtttgcatttctcaattttgtgt 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 428 taaaaaattgcttcaggaccattaaaagaacaatctagtttgcatttctcaattttgtgt 369
Query: 541 attctaatatgaatataaaatgcaattcactggatagaatcttgaatacnataagaactg 600
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 368 attctaatatgaatataaaatgcaattcactggataaaatcttgaatacaataagaactg 309
Query: 601 ataaaaa 607
|||||||
Sbjct: 308 ataaaaa 302
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|