BAC Information

Click to search

BAC

Clone NameMSMg01-336H08
Chromosome10 (Build37)
Map Location 126,730,698 - 126,730,819
singlet/doubletsinglet
Overlap geneDdit3
Upstream geneLOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045
Downstream geneMars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336H08.T7 (MSMg01no336_h08.b1)MSMg01-336H08.TJ (MSMg01no336_h08.g1)
ACCAG451472AG451473
length705724
length of high quality
(start - end)		152 (71 - 222)400 (74 - 473)
definitionCHROMAT_FILE: MSMg01no336_h08.b1 PHD_FILE: MSMg01no336_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:31 2005CHROMAT_FILE: MSMg01no336_h08.g1 PHD_FILE: MSMg01no336_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCGCGG
AATTCCGGTTGCCCAGAGATGCACAAAGAAACCATCTCACAACCCATTTT
AGAAAGGATCTAGAGAAGGGCTAGGAGGAGGCTGGAGGTAAAGGACTGTT
TCTTCCTTTTCTCCACAGTGTTCCAGAAGGAAGTGCATCTTTCATTACAC
CACCACACCTGAAAGCAGGTAATCTTGCCCACCTCTCAGTCAGCTGGCGA
TGCTGTTCATGGTGCTTTTGCTGGGGGAAAGAAGTAAGACAAGGCCCTTC
CTCCGGAACGAACTTTTTGTTTTTATAAACCAGGCCTTTTCCCGAACCCA
CATAAGGGGGTTTTTGGAAAAACGGGCTTTTTTAAAAACCCCCCCCCTCC
AAAGGGGGGGATAGATGGTTTGTTTTTTTTCTCCCCAATCTTTTTTTTAG
AGGTCCTCCCGGCTCTTGTTGAATAATTTCACTCCCCCCCGCGCGGGGGG
GGAGNNNNNGGGGTGTGTTTCTTTNNNNTNCCCCNNNNNGNAAATAAAAA
AATTAAGCCTCTTTTGTTGGGGCGTGCGTTATTCCTTTCTCCCCCCAAAA
AAAAAATATAAAAAGCCTTCTACTAACAAAACAAAAAAATAATTTTTTTT
CTCTCGCGCGGCCCCAGAAAAGAATAAAAAAATAACTGTTTCTCCCCCCC
CCCCN

AATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATGCCCTCTTTTAGCCTCTGTGGGCA
CTGCCCGGATGTGGTGCATAGACACTTACACACACAAAATAAATCTTAAA
AATTTTTTAAAAATGTAAATTCTCTATCCTTGCTAACAGTGGGGAATGTC
TTTCTCCTTTTTCCACTTCCTTTTAAGGTTTATTTTTATTGATACGTATG
TGTGTATCTTTGTGTGGAGTGTCACTGCTTGTGGAGGCCAGGGGTCATCC
GATCCCCTGCGATTCACCTGATGTGAATGTTGCAAAGGAGCTAAGGCCTT
CTGTAGGAGTGGCGCACACTGGCAACCACTGAGCATCTCAGCTTCAGCAA
GGCCAACAGGTGAGGACAACTAGAGCTTTAAAGTGAGACCTATATTCTGA
GTCTCCTATCGCACTCAGTTAGTACTGAGATATGGTATTAAACACTCAGG
CCCTCTGCACTCTGCAGCTTTCCTGTTGGTAAATCAGGAGAACAGATTTA
CAGTGAGTTGGTGCCAGCATAAAAGTATTCCTCTCACATCCATCCTATAT
TATCCCTCACAACGGGAATGAGAGGTTAAAAAGCAAGAATTTATGAAGTT
TGCCTTGGTTAAAAAGAACAGTATTGGGTACTGGAAAAATATTATATTTA
GAAAAGGAACTCTCCTCTTTAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_h08.b1 MSMg01no336_h08.b1 CHROMAT_FILE:
MSMg01no336_h08.b1 PHD_FILE: MSMg01no336_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:31 2005
         (152 letters)



>mm_chr10_126730470_126731019
          Length = 550

 Score =  217 bits (112), Expect = 3e-61
 Identities = 121/124 (97%), Gaps = 2/124 (1%)
 Strand = Plus / Plus

                                                                       
Query: 29  ttagaaaggatctagagaagggctaggaggaggctggaggtaaaggactgtttcttcctt 88
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 229 ttagaaaggatctagagaagggctaggaggaggctggaggtaaaggactgttttttcctt 288

                                                                       
Query: 89  ttctccacagtgttccagaaggaagtgcatctttcattacaccaccacacctgaaagcag 148
           ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 289 ttctccacagtgttccagaaggaagtgcatctt-cat-acaccaccacacctgaaagcag 346

               
Query: 149 gtaa 152
           ||||
Sbjct: 347 gtaa 350



 Score =  108 bits (56), Expect = 1e-28
 Identities = 59/60 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcacaaagaaaccatctcacaacccattttagaaaggatctagagaagggctaggaggag 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 105 gcacaaagaaaccatctcacaacccattttagaaaggatctagaaaagggctaggaggag 164


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 152
Length of database: 550
Length adjustment: 8
Effective length of query: 144
Effective length of database: 542
Effective search space:    78048
Effective search space used:    78048
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |