BAC Information

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BAC

Clone NameMSMg01-336K15
Chromosome10 (Build37)
Map Location 97,499,389 - 97,668,478
singlet/doubletdoublet
Overlap genenone
Upstream gene4930556N09Rik, EG667407, Dcn, Lum, Kera, Epyc, 4921510H08Rik
Downstream geneEG667438, EG432494, Atp2b1, Wdr51b, Galnt4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336K15.T7 (MSMg01no336_k15.b1)MSMg01-336K15.TJ (MSMg01no336_k15.g1)
ACCAG451628AG451629
length743733
length of high quality
(start - end)		493 (41 - 533)555 (69 - 623)
definitionCHROMAT_FILE: MSMg01no336_k15.b1 PHD_FILE: MSMg01no336_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:47 2005CHROMAT_FILE: MSMg01no336_k15.g1 PHD_FILE: MSMg01no336_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,667,989 - 97,668,478)(97,499,389 - 97,499,943)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGGACTCTATTGTGATATGTCTCTATTTTTTAATATCTGATCTTATTT
ATTTAGGTTTCAACTCTCTTTCATGTGTTAACTTAGCTAAAAGATTGCCC
ATATTAATAAAATGTTTAAAAACCAACTGTTTCTCTCCCCATGATGCTTA
TTGTTTCTTTTTGTCCAATGATTTTGGGTTTTGCTACTGTCATTTGTCTA
AGATCCTGAGGGATATTATTCATTTATTCAAATTTTCTCTGATTTTCAAG
TGAAAATTCTCATAGTTATATACCTTTCTTTAAAAATATTCTTACTACAT
CCAAAAATTCCAATATGTTTTATTATTCTTTTCACCTTATTCAGGAATTT
TTTCAAAAGTTCTTTCCCAATTTATTCAGTGATTTAGTGATCACATATGA
TTATTCTGTTTGATTTTCATGCAGTTGTATAGTTTCTCTTGATAATGACT
GCTAAGTTTATTCTATTATGATCTGATAAGATGAAAGAAATTTCAACACT
TTTTTATTTGGTAAAACATACCTGTCACCTAACAGGAAACCTATTTCAGA
GAATTATGTANGGTATATAGATCAATGATTACTCCACAGCTNGTGGATGG
ATGTTCATTGTGGNCTATAAAGTCCATTTGATCTGAAATTCTTCATGATT
CTTTGCCGGGGGGAATATGAATTGTGGGAAAACATTAATTTTT

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGGCCTGACTTCCCTCTGAAGTGAACTGCTC
CCTGGAAGTATAAGTTGAAGTAAGCACTTTCCTACCCAAGTCCTGTTCTG
GGCCAAGCCAATACTGGACCTCTGAATAATCATTGTTGGAAGGTGCTATT
TTTGACCTACCCCTTCCTGTTGCTTTATTGGCTACTAAAATACTCATTAG
TGTTCCTATTAATGAGACCTCCAAGGTCCAATGGACATTTACAACTGTGC
AAGGCCAAAAATACCAAATCAAACTAAAATAAAACAAAAAACCTTGAAAT
TAATCAAAAACAAATCTAAGGATGCATGCAGTTCTCTTAGACTGCTGACA
GATAAAATTTATCTGAAGCAAGAGAGCCTGAAAGACTCTCCCTTTAAATG
AGAGATTTAATGTTCATAGTATGAAATTTCAGGAAACCTAACCTCCCACC
TGAAATGCTGAAATGTTAAGCTTAGGATATCCAGCTCTATAATTAAAAAA
AAATTAAAGGAGCCTGGAAAACTATATTTACATATAATAACTATTCCAAT
ATAGTTTCTTCTCTGAAGTGATTTTACCACTCATTTTAGTGTAATGTGTT
ATGTCTGGAAGAACAAAAACTAGCTGATGTCNGAGATAAAAGAATGCTTC
TTCCAATNAAATTTTGTTCTCCCACAGGGAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_k15.b1 MSMg01no336_k15.b1 CHROMAT_FILE:
MSMg01no336_k15.b1 PHD_FILE: MSMg01no336_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:47 2005
         (493 letters)



>mm_chr10_97667786_97668678
          Length = 893

 Score =  932 bits (482), Expect = 0.0
 Identities = 488/490 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttggactctattgtgatatgtctctattttttaatatctgatcttatttatt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ggaattctttggactctattgtgatatgtctctattttttaatatctgatcttatttatt 634

                                                                       
Query: 64  taggtttcaactctctttcatgtgttaacttagctaaaagattgcccatattaataaaat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 taggtttcaactctctttcatgtgttaacttagctaaaagattgcccatattaataaaat 574

                                                                       
Query: 124 gtttaaaaaccaactgtttctctccccatgatgcttattgtttctttttgtccaatgatt 183
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 573 gtttaaaaaccaactgtttctctccccatgatgcttattgtttctttttgaccaatgatt 514

                                                                       
Query: 184 ttgggttttgctactgtcatttgtctaagatcctgagggatattattcatttattcaaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ttgggttttgctactgtcatttgtctaagatcctgagggatattattcatttattcaaat 454

                                                                       
Query: 244 tttctctgattttcaagtgaaaattctcatagttatatacctttctttaaaaatattctt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tttctctgattttcaagtgaaaattctcatagttatatacctttctttaaaaatattctt 394

                                                                       
Query: 304 actacatccaaaaattccaatatgttttattattcttttcaccttattcaggaatttttt 363
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 actatatccaaaaattccaatatgttttattattcttttcaccttattcaggaatttttt 334

                                                                       
Query: 364 caaaagttctttcccaatttattcagtgatttagtgatcacatatgattattctgtttga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 caaaagttctttcccaatttattcagtgatttagtgatcacatatgattattctgtttga 274

                                                                       
Query: 424 ttttcatgcagttgtatagtttctcttgataatgactgctaagtttattctattatgatc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ttttcatgcagttgtatagtttctcttgataatgactgctaagtttattctattatgatc 214

                     
Query: 484 tgataagatg 493
           ||||||||||
Sbjct: 213 tgataagatg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no336_k15.g1 MSMg01no336_k15.g1 CHROMAT_FILE:
MSMg01no336_k15.g1 PHD_FILE: MSMg01no336_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:47 2005
         (555 letters)



>mm_chr10_97499189_97500143
          Length = 955

 Score = 1011 bits (523), Expect = 0.0
 Identities = 547/555 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggcctgacttccctctgaagtgaactgctccctggaagtataagttgaagtaagcact 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 ctggcctgacttccctctgaagtgaactgctccctggaagtgtaagttgaagtaagcact 260

                                                                       
Query: 61  ttcctacccaagtcctgttctgggccaagccaatactggacctctgaataatcattgttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcctacccaagtcctgttctgggccaagccaatactggacctctgaataatcattgttg 320

                                                                       
Query: 121 gaaggtgctatttttgacctaccccttcctgttgctttattggctactaaaatactcatt 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 gaaggtgctatttttgacctaccccttcctgttgctttattggctactgaaatactcatt 380

                                                                       
Query: 181 agtgttcctattaatgagacctccaaggtccaatggacatttacaactgtgcaaggccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgttcctattaatgagacctccaaggtccaatggacatttacaactgtgcaaggccaa 440

                                                                       
Query: 241 aaataccaaatcaaactaaaataaaacaaaaaaccttgaaattaatcaaaaacaaatcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaataccaaatcaaactaaaataaaacaaaaaaccttgaaattaatcaaaaacaaatcta 500

                                                                       
Query: 301 aggatgcatgcagttctcttagactgctgacagataaaatttatctgaagcaagagagcc 360
           ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 501 aggatgcatgcagttctcttagactgctgacagattacatttatctgaagcaagagagcc 560

                                                                       
Query: 361 tgaaagactctccctttaaatgagagatttaatgttcatagtatgaaatttcaggaaacc 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 tgaaagactctccctttaaatgagagatttaatattcatagtatgaaatttcaggaaacc 620

                                                                       
Query: 421 taacctcccacctgaaatgctgaaatgttaagcttaggatatccagctctataattaaaa 480
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 621 taacctcccacctgaaatgctgaaatgttaagcttaggatatccagctctgtaatttaaa 680

                                                                       
Query: 481 aaaaattaaaggagcctggaaaactatatttacatataataactattccaatatagtttc 540
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaaattaaaggagcctggaacactatatttacatataataactattccaatatagtttc 740

                          
Query: 541 ttctctgaagtgatt 555
           |||||||||||||||
Sbjct: 741 ttctctgaagtgatt 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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