BAC Information

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BAC

Clone NameMSMg01-336M08
Chromosome10 (Build37)
Map Location 67,721,234 - 67,721,772
singlet/doubletsinglet
Overlap geneArid5b
Upstream geneNrbf2, Egr2, Gm237, LOC100040081, LOC100039618, Zfp365, Plekhk1, LOC100040136
Downstream gene1700040L02Rik, EG665342, Tmem26, A930033H14Rik, Rhobtb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336M08.T7 (MSMg01no336_m08.b1)MSMg01-336M08.TJ (MSMg01no336_m08.g1)
ACCAG451709AG451710
length751730
length of high quality
(start - end)
244 (42 - 285)537 (73 - 609)
definitionCHROMAT_FILE: MSMg01no336_m08.b1 PHD_FILE: MSMg01no336_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:56 2005CHROMAT_FILE: MSMg01no336_m08.g1 PHD_FILE: MSMg01no336_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCCTATTTAAATAGCCTCTATTTCCTATCTGTT
CTTGTGTAAGTTGAGCATATGCTGTCTCTGACTCATTCTGTTATATCTTT
CTCTGATTTCTCACTTTGTCTGCCCCTCAATTACACATCATTGTTTGGGA
TCAAACGTGTGCACTAAGGGCATGCTTGTGCTCTAGCCAGAGGGATTAAA
GGTGTGTGGTATATCTATATTACATCTGGATCATATTTTTGGATATGCCC
TTACCAGAGTATCCATGATGCTGGATTGAAATCTCTCAACAAGCACCCAT
ATACCAGGCAGCTCATAACCCACCTGTAATTCTAGTTCTAGGAGATTCAA
TGCCCTCTACTGACCTCTGCAGGCTACTGTATACACTTGGTACATATATA
CACGTATAGGCATTCCTGCCTACCCATAAATATATACAATGATTATTCAA
TGAACTGTTACTTCTTTTTGACAACCACCGTATTTCTGTCCTCCCCCCTC
CCCCACATTTTATATGACGATGTTTCTTTTCCCCTGATGTTGTTTTTAGT
CTCCCCGTCTGGCTTCCAATAACCAAAAAATGAACTCTCTTTCCCCGGGT
TATTTTTTGGTGGTAAAAATTATTTCTTTGTTATCCGTCTCTTTTTTACT
T
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTACTGGATAGTTTCATCATCAGGCCCAG
AAGGGAACTTAGAAGGCAGCATCTTTGCAGGGAAATGTTCATGACATGAG
CTTTATCTCATGTAGTCAGGAGAGATTTTATTCTCGAGTTCCCTGACTGA
ATTCTAGCTGACCCCAGGATGCTGCCCTGACTCTGCAACAGGACCAGGCT
GAAGGTCAACCAAGGAGAGAAATGGATGAGTAAATACAAATATGCCCTTC
ATAAAGGGTATATTGCTCTGAAGAGGCTAAAATTCATTTGCACTTCCATC
CTTGATGCTGGGAGCATCAATGCTAAGTTTCACCAGACAGGAAAGATCTG
GAAGTAAGACTCTGACTCATGGGACACCAGTGTAGTGGTTGAGGTGTGAC
CAGGAAAGCAATGTTGTTTATTATTATTATTATTATTATTATTATTATTA
TTATTATAATCCATTACTGAACACCAACTATGTGTCAGGCAGGATGGCGT
TTGGCCAAAATGAAGGAGACAAAACTCACTGTCCTTCTGGTCTCCATGGT
TACCTCTGAGTATATAGACTGGGAGTGTTTTGGCGGAGTATAGCATATAG
CCCTAACGTATTCTCATCCCTAATCAGGCCGAAACGTAACTTTTTTCGCA
GGGCTATAAAACGTCCTTTCTATGTCACGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_m08.g1 MSMg01no336_m08.g1 CHROMAT_FILE:
MSMg01no336_m08.g1 PHD_FILE: MSMg01no336_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:56 2005
         (537 letters)



>mm_chr10_67721036_67721972
          Length = 937

 Score = 1021 bits (528), Expect = 0.0
 Identities = 536/540 (99%), Gaps = 4/540 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactggatagtttcatcatcaggcccagaagggaacttagaaggcagcatctttgcaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tactggatagtttcatcatcaggcccagaagggaacttagaaggcagcatctttgcaggg 258

                                                                       
Query: 61  aaatgttcatgacatgagctttatctcatgtagtcaggagagattttattctcgagttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aaatgttcatgacatgagctttatctcatgtagtcaggagagattttattctcgagttcc 318

                                                                       
Query: 121 ctgactgaattctagctgaccccaggatgctgccctgactctgcaacaggaccaggctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ctgactgaattctagctgaccccaggatgctgccctgactctgcaacaggaccaggctga 378

                                                                       
Query: 181 aggtcaaccaaggagagaaatggatgagtaaatacaaatatgcccttcataaagggtata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aggtcaaccaaggagagaaatggatgagtaaatacaaatatgcccttcataaagggtata 438

                                                                       
Query: 241 ttgctctgaagaggctaaaattcatttgcacttccatccttgatgctgggagcatcaatg 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttgc-ctgaagaggctaaaattcatttgcacttccatccttgatgctgggagcatcaatg 497

                                                                       
Query: 301 ctaagtttcaccagacaggaaagatctggaagtaagactctgactcatgggacaccagtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctaagtttcaccagacaggaaagatctggaagtaagactctgactcatgggacaccagtg 557

                                                                       
Query: 361 tagtggttgaggtgtgaccaggaaagcaatgttgtttattattattattattattattat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tagtggttgaggtgtgaccaggaaagcaatgttgtttattattattattattattattat 617

                                                                       
Query: 421 tattattattattat---aatccattactgaacaccaactatgtgtcaggcaggatggcg 477
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tattattattattattataatccattactgaacaccaactatgtgtcaggcaggatggcg 677

                                                                       
Query: 478 tttggccaaaatgaaggagacaaaactcactgtccttctggtctccatggttacctctga 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tttggccaaaatgaaggagacaaaactcactgtccttctggtctccatggttacctctga 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)