BAC Information

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BAC

Clone NameMSMg01-337D20
Chromosome10 (Build37)
Map Location 128,752,921 - 128,753,363
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749
Downstream geneOlfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827, Neurod4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337D20.T7 (MSMg01no337_d20.b1)MSMg01-337D20.TJ (MSMg01no337_d20.g1)
ACCAG452063AG452064
length737787
length of high quality
(start - end)		620 (41 - 660)448 (66 - 513)
definitionCHROMAT_FILE: MSMg01no337_d20.b1 PHD_FILE: MSMg01no337_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:33 2005CHROMAT_FILE: MSMg01no337_d20.g1 PHD_FILE: MSMg01no337_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTCTGATTCCACCTCTTCTTCTTTTTATGCCTTTCTCCTTTTCGTTTCTT
TTCTCCTCTTCTTCCTCCTTCTAATTCTTTACAACTCAATGAGTTTATAA
CTAGAGTAACTTACATATATACAAATTAGGGATTATTTTATGGGTGATGG
ATAATTTATTTGTGACTTTATCCCTGAAGGAAAATGACTCCCTTCAATAT
GAATCACTCAATAACTGATAACTATTAATAACTTCTCAACAGGGGTAGGT
CCTCATATGTTCTTCCCTCATCCTTGCTGGAATGTTGATGATCTGTTTTG
TCTAGGAGACCACAGCTGTTCATGAGTGTACCCACCATGTCTTGCCCAGA
GGGAGCATTTTATAGCACCCTTCTCCGTCCTCTACCCTCATGGTTTGGTT
TTTTTCTATTCCTCTTTTCTTGGTGTTTTTTGATCCTCAGGTCGTAGTAA
TAAATGTCTTCTTTTGTTTTAAATTGGATATTTTATTTATTTACATTTCA
AATGTTATCCTCCTTCCAGGTTTCCCCTCTGGAAACCCCCTATCCCATCC
TTCTGCTTCTATGAGGGTGCTAACCCACCCAACTACCCTCCCATTCATTC
CCACCTCACCACCCTGGCATTCCCCTACATTAAGGCATCTAGACTTCACA
GGACCAAGGGCCTCTCCTCCCATTGATGCCTGACAAG

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGGACAGCCAGGGATATACAGAGAAACCCTGTCT
CGAAAAACAAACAAACAAACAAAAGAAAGAAACAAAATTAAATTTTAAAA
AGTTTCCTTATTTTTGCAAAATTGAATGAAACAGAGTAAAATAAAATTTT
TTCTTGCTCTGCCTTATAAAAGGAAATACGCAGCTATGTATCAGTGAAAT
AAAGCCTCTCAGTCATAGGAATAGTTATTACAATAACCTGGACTGCAGGA
AACCTTGACTCTGACCATAGTGGGCTCAATCTGGAAGGGAGAGAGGAGGT
GGGAGTTGGAAGGGGAAACACCATGTTTCATTCCCCTATGGGCTAAGTGG
ATGTCTCAAAGGACTAAAAATCAAAAGGGATGAGAGATAGAAGATAGAGT
ACATCTCAGCATTTAATACAGACTACGTGTAATATTACAAGCAGGGACTT
TTGGAGGGAAATCAGGAAGGGGGGGATAACATTTACTATGTAAATAAGCC
CTCAACAAAAACTTAAAAGAAGAAATTGACATTGTACAGGTCCAAGACTG
TTTCCAAACAGCAGTACACTGAATTGTTTTTTGACTTGGAAAGGGAATTT
CCACTTCTTCTCATCCGGAATATCCGAACGAATATGAAAAAATCAATTAC
TCGGTTTGGAACAAAAATTTTTTAAATTTTAAATCCCCTTAAAATCACCC
TAAATCTTCTTCGCAGTTTGCCCTTCTTTTCCACCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_d20.g1 MSMg01no337_d20.g1 CHROMAT_FILE:
MSMg01no337_d20.g1 PHD_FILE: MSMg01no337_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:33 2005
         (448 letters)



>mm_chr10_128752675_128753517
          Length = 843

 Score =  748 bits (387), Expect = 0.0
 Identities = 432/449 (96%), Gaps = 7/449 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccagggatatacagagaaaccctgtctcgaaaaacaaacaaacaaacaaaag 60
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 caggacagccaagcatatacagagaaaccctgtctcgaaaaacaaacaaacaaacaaaag 630

                                                                       
Query: 61  aaagaaacaaaattaaattttaaaaagtttccttatttttgcaaaattgaatgaaacaga 120
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||    |||
Sbjct: 629 aaagaaacaaaattaaattttaaaaagtttccttatttttgc-aaattgaatg----aga 575

                                                                       
Query: 121 gtaaaataaaattttttcttgctctgccttataaaaggaaatacgcagctatgtatcagt 180
           |||||||||||||||| ||||| ||||| ||||||||||||||| |||||||||||||||
Sbjct: 574 gtaaaataaaattttt-cttgccctgccctataaaaggaaatacacagctatgtatcagt 516

                                                                       
Query: 181 gaaataaagcctctcagtcataggaatagttattacaataacctggactgcaggaaacct 240
           |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 515 gaaataaagcctttcagtcataggaatagttattacagtaacctggactgcaggaaacct 456

                                                                       
Query: 241 tgactctgaccatagtgggctcaatctggaagggagagaggaggtgggagttggaagggg 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 455 tgactctgaccatagtgggctcaatctggaagggagagaggaggtgggtgttggaagggg 396

                                                                       
Query: 301 aaacaccatgtttcattcccctatgggctaagtggatgtctcaaaggactaaaaatcaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 395 aaacaccatgtttcattcccctatgggctaagtggatgtctcaaaggactaaaaatcaag 336

                                                                       
Query: 361 agggatgagagatagaagatagagtacatctcagcatttaatacagactacgtgtaatat 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 335 agggatgagagatagaagatagagtacatctcagtatttaatacagactacgtgtaatat 276

                                        
Query: 421 tacaagcagggacttttggaggg-aaatc 448
           ||||||||||||||||||||||| |||||
Sbjct: 275 tacaagcagggacttttggaggggaaatc 247


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 843
Length adjustment: 10
Effective length of query: 438
Effective length of database: 833
Effective search space:   364854
Effective search space used:   364854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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