Query= MSMg01no337_k16.b1 MSMg01no337_k16.b1 CHROMAT_FILE:
MSMg01no337_k16.b1 PHD_FILE: MSMg01no337_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:07 2005
(616 letters)
>mm_chr10_39643328_39644343
Length = 1016
Score = 1094 bits (566), Expect = 0.0
Identities = 596/612 (97%), Gaps = 12/612 (1%)
Strand = Plus / Plus
Query: 6 gaattcactaacctgtccccacaacaccaattgaagcaccaaacacagccatcatgataa 65
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcactaacctgtatccacaacaccaattgaagcaccaaacacagccatcatgataa 265
Query: 66 tcagtaaaaatgcctttttgcaaaaaggaatgagataaaatccaactgcagtaattaaca 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tcagtaaaaatgcctttttgcaaaaaggaatgagataaaatccaactgcagtaattaaca 325
Query: 126 ttgacacacctgagaaaaaagaataaagccagctagaaaacaagtgtttgtgaaggtcag 185
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttgacacacctgaggaaaaagaataaagccagctagaaaacaagtgtttgtgaaggtcag 385
Query: 186 aagtcaaagggacatcataagaaattctaaaatgaaaactaacactgaattaaagctgtt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aagtcaaagggacatcataagaaattctaaaatgaaaactaacactgaattaaagctgtt 445
Query: 246 tggtcttgggctgggcatagcggtgcacatctttaatcacagcacttgggagacagatgt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tggtcttgggctgggcatagcggtgcacatctttaatcacagcacttgggagacagatgt 505
Query: 306 gggcagagctctatgaattgaggccaacatgatctatatagatagtttccggccagctgg 365
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gggcagagctctatgaattgaggccaacatgatctatatagatagtttccggc------- 558
Query: 366 ggctacatagtgagcgcttgtcccaaatacaaaaaaaggtaaaaccgaatcacaacaaca 425
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ---tacatagtgagcgcttgtcccaaatacaaaaaaaggtaaaaccgaatcacaacaaca 615
Query: 426 aaaatgtgagtatgagtagatgaaagacgaagtggtgatatgtggtggattaa-tctaaa 484
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 616 aaaatgtgagtatgagtagatgaaagacgaagtggtgatatgtggtgg-ttaaatctaaa 674
Query: 485 gcttttataagttttgtggccatagaaatgtaaattactatgacttgaatccaatcctat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 675 gcttttataagttttgtggccatagaaatgtaaattactatgacttgaatccaattctat 734
Query: 545 cattgctaatgatcaagttagaaattgtaacaaaagataaattttatagtgtttgagtca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 cattgctaatgatcaagttagaaattgtaacaaaagataaattttatagtgtttgagtca 794
Query: 605 gtccaaaaagtg 616
||||||||||||
Sbjct: 795 gtccaaaaagtg 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_k16.g1 MSMg01no337_k16.g1 CHROMAT_FILE:
MSMg01no337_k16.g1 PHD_FILE: MSMg01no337_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:07 2005
(531 letters)
>mm_chr10_39799269_39800199
Length = 931
Score = 951 bits (492), Expect = 0.0
Identities = 519/528 (98%), Gaps = 1/528 (0%)
Strand = Plus / Minus
Query: 1 cagtctatggtttaagaaaataataaaaaaaataaaaatttaaaaaatattaaaacattt 60
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 793 cagtctatggtttaagaaaataataaaaataataaaaattt-aaaaatattaaaacattt 735
Query: 61 taatatcatgacaaaatgaggtggttaaatattcttgaaaacttaatgtcataaattaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 734 taatatcatgacaaaatgaggtggttaaatattcttgaaaacttaatgtcataaactaca 675
Query: 121 tctattagaagaaaaaatgcaggcctccaaagacactaatgacaggacacgctgtgatgt 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tctattagaagaaaagatgcaggcctccaaagacactaatgacaggacacgctgtgatgt 615
Query: 181 tcagagctcttgtcctcagttctctttgtggctctgagaatttcagttagaagaacactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 614 tcagagctcttgtcctcagttctctttgtggctctgagaatttcagttagaggaacactg 555
Query: 241 gtgtactctgccacactggttggtagcaggggccattagcaaggagaagcccgaagacca 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 554 gtgtactctgccacactggttggtagcaggggccattagcaaggagaagcccaaagacca 495
Query: 301 ttctccagctggggcttaccttgcctctcccccatgcctaccctcgtgttctttagttga 360
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 494 ttctccagctggggcttatcttgcctctcccccatgcctaccctcgtgttccttagttga 435
Query: 361 aaaccatgatgtagtccttggtggcagtcagaaggaatccagcttgtagagtagccctgc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 434 aaaccatgatgtagtccttggtggcagtcagaaggaatccagcttgtagagttgccctgc 375
Query: 421 tttctaagtttcttcttatttattcagaggcatgcttagcttctcatgtcactccgtaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tttctaagtttcttcttatttattcagaggcatgcttagcttctcatgtcactccgtaca 315
Query: 481 cacacagctcttcctcagtctaagcaagcagctagcatttgtactttt 528
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cacacagctcttcctcagtctaagcaagcagctagcatttgtactttt 267
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
