BAC Information

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BAC

Clone NameMSMg01-337P11
Chromosome10 (Build37)
Map Location 55,589,962 - 55,590,516
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382460, LOC100041927
Downstream geneD630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347, LOC100042622, LOC668355
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337P11.T7 (MSMg01no337_p11.b1)MSMg01-337P11.TJ (MSMg01no337_p11.g1)
ACCAG452613AG452614
length760762
length of high quality
(start - end)
468 (43 - 510)556 (72 - 627)
definitionCHROMAT_FILE: MSMg01no337_p11.b1 PHD_FILE: MSMg01no337_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:29 2005CHROMAT_FILE: MSMg01no337_p11.g1 PHD_FILE: MSMg01no337_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGTACTATAGCCAGCTGGCCCTGGGCTTCTTTTGGTTGGGGACGTTTA
ATGACTTTTTCTATTTCTGTAGGTGTTATGGGACTGTGTAGATGGTTTAC
CTGATCCTGATTTTACTTTGGTATCTAATATCTGTCTACCTGAAGGTGTT
TGCAATCCCACAGGAAGAACAATATCAGTGAACCAGACCCCACAAAGCTC
CCAGGGACGAAACTGCCAACCAAAGAATACACATGGGAGGGATACATGGC
CCCAGCTGAATATGTGGCAGAGGATTGCTTTATCTGGCATCAATGAGAGG
GAAGTCCCTTGGTCCTGTAAAGGCTCAATGCCCCAGTGCAGGGGAATGCT
AGAGTGCTGAGGCAGAAGTGGGTGGGCAGGTTGGGGAGCACCCTCATAGA
GGCAGGGGGAGGAGTGAGAGAATAGGGGATTTGTGGAGGGGAAACTGGAA
AGGGGATAGGATTTGANATGTAAATACATAAAATAACCAATAAAAAATGA
ATTATAAGAAGGGAANTGTCCTAATATCTGTTTCTCTTTGTTGCCTCCCA
CATAATCTTAACCCTTTGTTATTCTTACTTATCCTTATTCCGTTGCTCAT
TTCTCTATGGAGCTTTGTTTAAAATTAAGTTTCCTTTTCTCTTTTTTTTC
TTGGATATTTATTTTCTTCTTTCTTCTATACCACTATATTTTCTTCCCTT
TTTCTTTTTG
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTAGGACAGCCAGGACTACAAAGAGAAACC
CTGTCTTGAAAAAAAAAATAATGTATCTTATATGTATCTTAACCTATGTT
CAGAATGACCCTTTATTAATTAACCAAATGGAGGCCATGAGCTGAAAAGA
TACCAGGTAAGTAAAATGTATTGTACCTTCTGTAGCAATATTAACTTAAA
CCTCTGCTAACCACAGAGAAAACAGTAACTGCAAAAATAAGTTGTGATGC
TCTGTCTCTGAAAGAGGCATAATTATTTACCACAAGCTCAAGGATATCTT
TGATCACAAAAGTGAGCCGTGGTTGCTTTGAAACTGCTGTAATCAATTAA
TCAGTTTTTCAAAATATGCATTAAGATTTTGAAGATACGATTTAAACAAG
CCTTTAATTATAATATACTAAGTGTTCTTGGTGGTCTGTACATGTTATTG
ATAGCATTTCATCTTAGCTTAATTTTCATGCCATTAGTAATTACTTTTTT
ATTTATTGGATATTTTATTTATTTATATTTCCAGTGTTATACCCTTTTCT
GATCCCCCCAGAAGTCCCCATCCAATCCCCCCTCCTCCTGCTTCTATGAG
GGTGTACGCCCACCCACCCATTCTGGCTCCCTACCCCCAATTCCCCTACA
CTGGGGGCTCCAGGGGACTTAAAAACCCCTCTCTTGCCCCCCATTTCAGA
ATCCCCCCTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_p11.g1 MSMg01no337_p11.g1 CHROMAT_FILE:
MSMg01no337_p11.g1 PHD_FILE: MSMg01no337_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:30 2005
         (556 letters)



>mm_chr10_55589761_55590716
          Length = 956

 Score = 1052 bits (544), Expect = 0.0
 Identities = 553/556 (99%), Gaps = 1/556 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggacagccaggactacaaagagaaaccctgtcttgaaaaaaaaaataatgtatcttat 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 202 taggacagccaggactacaaagagaaaccctgtcttgaaaaaaaaa-taatgtatcttat 260

                                                                       
Query: 61  atgtatcttaacctatgttcagaatgaccctttattaattaaccaaatggaggccatgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtatcttaacctatgttcagaatgaccctttattaattaaccaaatggaggccatgag 320

                                                                       
Query: 121 ctgaaaagataccaggtaagtaaaatgtattgtaccttctgtagcaatattaacttaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaaaagataccaggtaagtaaaatgtattgtaccttctgtagcaatattaacttaaac 380

                                                                       
Query: 181 ctctgctaaccacagagaaaacagtaactgcaaaaataagttgtgatgctctgtctctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctgctaaccacagagaaaacagtaactgcaaaaataagttgtgatgctctgtctctga 440

                                                                       
Query: 241 aagaggcataattatttaccacaagctcaaggatatctttgatcacaaaagtgagccgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 aagaggcataattatttaccacaagctcaaggatatctttgatcacaaacgtgagccgtg 500

                                                                       
Query: 301 gttgctttgaaactgctgtaatcaattaatcagtttttcaaaatatgcattaagattttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttgctttgaaactgctgtaatcaattaatcagtttttcaaaatatgcattaagattttg 560

                                                                       
Query: 361 aagatacgatttaaacaagcctttaattataatatactaagtgttcttggtggtctgtac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagatacgatttaaacaagcctttaattataatatactaagtgttcttggtggtctgtac 620

                                                                       
Query: 421 atgttattgatagcatttcatcttagcttaattttcatgccattagtaattactttttta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgttattgatagcatttcatcttagcttaattttcatgccattagtaattactttttta 680

                                                                       
Query: 481 tttattggatattttatttatttatatttccagtgttatacccttttctgatccccccag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttattggatattttatttatttatatttccagtgttatacccttttctgatccccccag 740

                           
Query: 541 aagtccccatccaatc 556
           ||| ||||||||||||
Sbjct: 741 aagcccccatccaatc 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)