BAC Information

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BAC

Clone NameMSMg01-337P15
Chromosome10 (Build37)
Map Location 119,917,359 - 119,917,778
singlet/doubletsinglet
Overlap genenone
Upstream geneGrip1, Helb, Irak3, Tmbim4, 1190005P17Rik, Hmga2
Downstream geneLOC100042902, Msrb3, LOC100043488, Lemd3, Wif1, LOC100042911, 4930505D03Rik, LOC100043498, Gns, Rassf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337P15.T7 (MSMg01no337_p15.b1)MSMg01-337P15.TJ (MSMg01no337_p15.g1)
ACCAG452621AG452622
length7531,151
length of high quality
(start - end)		450 (38 - 487)---
definitionCHROMAT_FILE: MSMg01no337_p15.b1 PHD_FILE: MSMg01no337_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:30 2005CHROMAT_FILE: MSMg01no337_p15.g1 PHD_FILE: MSMg01no337_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGT
AAGTTCTGAGAGGAAGCCTAGACTCTATTTTCGACATGGGAATATATTAA
GATGTAAACATAATGTTGGGGAAGTCTTGAGAACCCTGATCCCCTCCCTC
ATCACAGCCGAACCTTCCTTTAAGAAGACTGAAGACATCTTATTACAGGC
TACCTCTCTTAACCTCTGTGGTATATTTTATAACATTGTATTAAGATGAC
CTTTGCCGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGATCGAGGCC
AGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAA
CCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAGATGACCTTTGC
CTTAGTAATGAATTAAGAATAATCACCAGAAGCTTGCTATGAACCAAATA
ACATCTAGACAACACGAGCAAGACAGAAACCGCGATGXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXN

CTCCTCTAAAGAAAAAAGANNNNNNCCGGGCCTACATGCACCAAGCGGGG
AGNNNANNANNNAAGGGTGCCAACACAAAAAGGGGGGNGGNNGGGGAGGG
AGGACGAAGNACACCAGATTTTGGCGAGCCCACACATTTTTACCCCCGCA
AGCAAGTCTCCCAAAGAGCAACGAAGAACCACGCACACATCACTACACAA
TTCGCGTAGGGGGTGAGCGACCACGATATAACTACCTAAATGGACATTAA
TATCCACACTATAGTATTCTACAGGATCCGATCACCCCACATCATGAAAT
AGACACCCCACGGTACGTTTCTATACCGCTTACTTGTATAAACAGATACT
TGCACGCTTTTCTAGCCTAATATACTCTTTCCCACAACTCCCGCCCACTT
CCTTATCTTTTTTTTTTCTTCTTACCATAATGATTATTCTCACAAGCAAT
CAAAAGCATAAAACCTTATATATTATGTACATATACTACACACATAAGAC
TAGATAGAGCCCTTATCTCCCTGCTTATGCAATATATACTTACGCTCCCC
CCCCCCCACACTATTGTCTCTATATCTCTCTTCTTCACCCCCCCTATATC
GCCCCTCAATCTATCCACTCCATTTAGTTATAGCCTCGCCACCTGTCTGA
TAATATATTAAATATCCAACACTCCTTCCTCACACTTCTTAATTAAACCT
GCACTATCTCGTACTCATACTGATACCCTTCATTATGTAATATCCTCCGG
ATAAGTAATACCCTTATTCATCAGCTAATATTCACTTTAACATAATATAC
CGTATCCTCTACCACATCCCATTAAAACNTATACTACATCCCACTCGCCC
TCCTTTCTCCGTATACACCAATCTCCGCCTATTCATACTCCCCTACTCTA
CTATCTACCACGACTACTAATCAACACAAACCATTCCATCATATCCTAAC
ATACATCGTACTCATCTGATACAACACTATATACTATACCTCACGTCATT
ACAACCAGCTTTATCTCACCACAACACTCTTATATTTTAATATCACTAGT
CAGATCCACTACCACACTGACTTTCCCACCGTCTACTACCACCAAATTAA
CATCCCGCCACTTCCATTATCCTACCGCTATTTACTCCGCACCCTTCACA
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_p15.b1 MSMg01no337_p15.b1 CHROMAT_FILE:
MSMg01no337_p15.b1 PHD_FILE: MSMg01no337_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:30 2005
         (450 letters)



>mm_chr10_119917359_119918208
          Length = 850

 Score =  739 bits (382), Expect = 0.0
 Identities = 414/436 (94%), Gaps = 19/436 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtaagttctgagaggaagcctagactctattttcgacatgggaatatattaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gaattcagtaagttctgagaggaagcctagactctattttcgacatgggaatatattaag 361

                                                                       
Query: 65  atgtaaacataatgttggggaagtcttgagaaccctgatcccctccctcatcacagccga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 atgtaaacataatgttggggaagtcttgagaaccctgatcccctccctcatcacagccga 301

                                                                       
Query: 125 accttcctttaagaagactgaagacatcttattacaggctacctctcttaacctctgtgg 184
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 300 accttcctttaagaagactgaagacatcttattacaggctacttctcttaacctctgtgg 241

                                                                       
Query: 185 tatattttataacattgtattaagatgacctttgccgcacttgggaggcagaggcaggcg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 240 tatattttataacattgtattaagatgacctttgccgcacttgggaggcagaggcaggca 181

                                                                       
Query: 245 gatttctgagatcgaggccagcctggtctacaaagtgagttccaggacagccagggctac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 180 gatttctgagatcgaggccagcctggtctacaaagtgagttccaggacagccagggcta- 122

                                                                       
Query: 305 acagagaaaccctgtctcgaaaaacc---aaaaaaaaaaaaaaaaaaaaagatgaccttt 361
                          |||||||||||   |||||||||||||||||||||||||||||||
Sbjct: 121 ---------------ctcgaaaaaccaaaaaaaaaaaaaaaaaaaaaaaagatgaccttt 77

                                                                       
Query: 362 gccttagtaatgaattaagaataatcaccagaagcttgctatgaaccaaataacatctag 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  gccttagtaatgaattaagaataatcaccagaagcttgctatgaaccaaataacatctag 17

                           
Query: 422 acaacacgagcaagac 437
           |||||| |||||||||
Sbjct: 16  acaacatgagcaagac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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