Query= MSMg01no338_g17.b1 MSMg01no338_g17.b1 CHROMAT_FILE:
MSMg01no338_g17.b1 PHD_FILE: MSMg01no338_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:03 2005
(600 letters)
>mm_chr10_25732380_25733379
Length = 1000
Score = 1098 bits (568), Expect = 0.0
Identities = 589/600 (98%), Gaps = 6/600 (1%)
Strand = Plus / Plus
Query: 1 aaagagtattaaacaataatttaattttctcttcatgactcagagttatattgctttgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagagtattaaacaataatttaattttctcttcatgactcagagttatattgctttgtt 260
Query: 61 ttgattctgaatatcagctatgacttgaatgtctgccttaccctaagaactgggtgaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgattctgaatatcagctatgacttgaatgtctgccttaccctaagaactgggtgaaaa 320
Query: 121 gccaagattcctgaaggagcttgtattcaggaagaggaactagtgttaaggtagacctta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaagattcctgaaggagcttgtattcaggaagaggaactagtgttaaggtagacctta 380
Query: 181 gaaatagagaatgggctaagcacaagggaaagtctccagccccagcgcatgtgcactcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaatagagaatgggctaagcacaagggaaagtctccagccccagcgcatgtgcactcat 440
Query: 241 ctgcacacacacgtgtacatacacacacacacacacacacacacacacacacacacacac 300
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgcacacacacgtgtacat------acacacacacacacacacacacacacacacacac 494
Query: 301 acacacagagagagaggggggggcaaggttgtaatcctatcactggatcaagctggtctg 360
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 acacagagagagaggggggggggcaaggttgtaatcctatcactggatcaagctggtctg 554
Query: 361 tctatccatgcaaataaaggccacaggagtcgagagaaagcagactaagctcactgggtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tctatccatgcaaataaaggccacaggagtcgagagaaagcagactaagctcactgggtt 614
Query: 421 aatagtaccactgctgctgtctgcagctgcccttcactggtaagttctcattggagggtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aatagtaccactgctgctgtctgcagctgcccttcactggtaagttctcattggagggtt 674
Query: 481 ctaagacactgtgtcccagacacgaataaccaaataatgatgctgctgttgctagtatta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ctaagacactgtgtcccagacacgaataaccaaataatgatgctgctgttgctagtatta 734
Query: 541 cttactgtattagaatctagaatttccttannatctttcataatcgcaataacggagatg 600
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 735 cttactgtattggaatctagaatttccttaaaatctttcataatcgcaataacggagatg 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_g17.g1 MSMg01no338_g17.g1 CHROMAT_FILE:
MSMg01no338_g17.g1 PHD_FILE: MSMg01no338_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:03 2005
(598 letters)
>mm_chr10_25876998_25877992
Length = 995
Score = 946 bits (489), Expect = 0.0
Identities = 569/601 (94%), Gaps = 13/601 (2%)
Strand = Plus / Minus
Query: 1 ttttctttttttctttctttttttttttttttttt--tttccgnttttcgagacagggtt 58
||||||||||||||||||||||||||||||||||| | ||||| ||||||||||
Sbjct: 976 ttttctttttttctttcttttttttttttttttttggt------ttttcaagacagggtt 923
Query: 59 tctctgtatagccctggctgtcctggaactgaatctcattggctgtttgtatgctttagt 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 tctctgtatagccctggctgtcctggaactgaatctcattggctgtttgtatgctttagt 863
Query: 119 ttttaagcaaaactcttaattatgcatctcaaaaatacctgcagaatatattattaattt 178
||||||||| ||||||||||||| ||||||| || | |||||||||||||||||||||||
Sbjct: 862 ttttaagcagaactcttaattatccatctcagaagtgcctgcagaatatattattaattt 803
Query: 179 taattttctcacttattaattttttctggagtaagagcggtctaggtttcaa-ccttctc 237
||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||
Sbjct: 802 taattttctcacttattaattttctctggagtaagagtggtctaggtttcaacccttctc 743
Query: 238 ccattaaaaaaaccttggaagacttggaagatatttaaagtatgtttagaaagcccatag 297
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 742 ccatt-aaaaaaccttggaagacttggaaaatatttaaagtatgtttagaaagcccatag 684
Query: 298 tttggacaaaggaaaaaaaagcaatgtattacttttaaaatcaaagtttcatacttttaa 357
||||||||||||||| |||||||||| | ||||||||||| ||||||||||||||||
Sbjct: 683 tttggacaaaggaaacgaaagcaatgtgt---ttttaaaatcagagtttcatacttttaa 627
Query: 358 agtagttgcttgctttgaacaattctttctcttccttaatttcaatttagattacccaaa 417
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 626 agtagttgtttgctttgaacaattctttctcttctttaatttcaatttagattacccgaa 567
Query: 418 gggtggaatacatttgcatactggactgtgaagggctttgatccttctttgcaactgtga 477
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gggtggaatacatttgcatattggactgtgaagggctttgatccttctttgcaactgtga 507
Query: 478 gaaatctcttctgagtcttgaagaaaccttttaaaagagagtcgttagacttctctaaag 537
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 506 gaaatctcttctgagtcttgaagaaaccttttaaaagagagtcgttagactgctctaaag 447
Query: 538 ttatcctttaatagtcaccttatatgtatttttcgaaaacaaatctactgtgcttctagt 597
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 446 ttatcctttaatagtcaccttatatgtatttttcgaaaacaaatctactgtgtttctagt 387
Query: 598 t 598
|
Sbjct: 386 t 386
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 995
Length adjustment: 10
Effective length of query: 588
Effective length of database: 985
Effective search space: 579180
Effective search space used: 579180
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
