Query= MSMg01no338_i01.b1 MSMg01no338_i01.b1 CHROMAT_FILE:
MSMg01no338_i01.b1 PHD_FILE: MSMg01no338_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:09 2005
(519 letters)
>mm_chr10_54457342_54458260
Length = 919
Score = 897 bits (464), Expect = 0.0
Identities = 482/488 (98%), Gaps = 1/488 (0%)
Strand = Plus / Plus
Query: 14 gaattcttccttgctttgcgcttcattgatctgagatgtattttgttctttaaaatttca 73
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaattcttccttgctttgcgtttcattgatctgagatgtattttgttctttaaaatttca 272
Query: 74 ccagagtcttgtttaaattactctaggataccataacaccttaggtttgacttatgtgta 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ccagagtcttgtttaaattactctaggataccataacaccttaggtttgacttatgtgta 332
Query: 134 tgatgcagaataagaaataggacactgaaacttttctggcctgacttgcaatcttggatt 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tgatgcagaataagaaataggacactgaaacttttctggcctgacttgcaatcttggatt 392
Query: 194 tgctgtcatgatcatgtgcaagttactttgcctccccatgtcttagtgtagtaatcttca 253
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 393 tgctgtcatgatcatgtgcaagttactttgcctccccatgtcttagtgtagcaatctgca 452
Query: 254 gaataaagaattttataaaaattctctaaggcc-atcttcatctctaaatgtgacttgat 312
||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 453 gaatacagaattttataaaagttctctaaggcccatcttcatctctaaatgtgacttgat 512
Query: 313 gcttcttttatttaaagaaataggagccaggaaaaatgaaacaaggggtatcttctatca 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gcttcttttatttaaagaaataggagccaggaaaaatgaaacaaggggtatcttctatca 572
Query: 373 gtttttactcatttaagtaaaactgcactttcattgatattaaaacaagtactagccatt 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gtttttactcatttaagtaaaactgcactttcattgatattaaaacaagtactagccatt 632
Query: 433 catttggcaatttggcatgtttcattccaccatgcagtgtgtgtgtgtgtgtgtgtgtgt 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 catttggcaatttggcatgtttcattccaccatgcagtgtgtgtgtgtgtgtgtgtgtgt 692
Query: 493 gtgtgtgt 500
||||||||
Sbjct: 693 gtgtgtgt 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_i01.g1 MSMg01no338_i01.g1 CHROMAT_FILE:
MSMg01no338_i01.g1 PHD_FILE: MSMg01no338_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:09 2005
(499 letters)
>mm_chr10_54502954_54503852
Length = 899
Score = 903 bits (467), Expect = 0.0
Identities = 492/501 (98%), Gaps = 2/501 (0%)
Strand = Plus / Minus
Query: 1 cagtggcagaattcgttttgtcttaaaatgtgtgagactttcagttctattccctgctaa 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 560 cagtggcagaatttgttttgtcttaaaatgtgtgagactttcagttctattccatgctaa 501
Query: 61 ttcttttgatcaataaaaagtaagtacagctgaatggtgggtcttgattatagctctgtt 120
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 500 ttcttttgatccataaaaagtaagtacagctgaatggtgggttttgattatagctctgtt 441
Query: 121 atcacataagaaagacaaagctgcaaattagaggtttttattctcccttaacatagcttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atcacataagaaagacaaagctgcaaattagaggtttttattctcccttaacatagcttg 381
Query: 181 ttcttactcattttcttagccatatcacctatacaacttacttcttcaggacatataaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttcttactcattttcttagccatatcacctatacaacttacttcttcaggacatataaat 321
Query: 241 tccattgtatgcaaaagatatgtttctataatattactagcagtgatgaaagtgtccact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tccattgtatgcaaaagatatgtttctataatattactagcagtgatgaaagtgtccact 261
Query: 301 ctagaggttttagacaagatgatagtagcataacaatgccatttaatattctttcaaaac 360
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctagaggttttaaacaaaatgatagtagcataacaatgccatttaatattctttcaaaac 201
Query: 361 ttaaatttattatttattaatttaaaaatttggaaatctaattcaaattttaatatataa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ttaaatttattatttattaatttaaaaatttggaaatctaattcaaattttaatatataa 141
Query: 421 taatcttcatcacatactttttt--ataaatatgtgatattctttagttaaatctatata 478
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 140 tattcttcatcacatacttttttttataaatatgtgatattctttagttaaatctatata 81
Query: 479 agctgagaaaaactggtggtc 499
|||||||||||||||||||||
Sbjct: 80 agctgagaaaaactggtggtc 60
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
