BAC Information

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BAC

Clone NameMSMg01-338K01
Chromosome10 (Build37)
Map Location 44,345,160 - 44,345,403
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668190, LOC100041418, 1700027J07Rik, EG668192, Qrsl1, Rtn4ip1, Aim1, LOC546475, Speer5-ps1, Atg5, LOC100041506, Prdm1, LOC546476
Downstream gene4930431F10Rik, LOC629573, LOC100041529, EG215974, Prep, Popdc3, Bves, Lin28b, Dbil5-ps, LOC100042364, Hace1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338K01.T7 (MSMg01no338_k01.b1)MSMg01-338K01.TJ (MSMg01no338_k01.g1)
ACCAG453110AG453111
length1,349746
length of high quality
(start - end)
---244 (71 - 314)
definitionCHROMAT_FILE: MSMg01no338_k01.b1 PHD_FILE: MSMg01no338_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:18 2005CHROMAT_FILE: MSMg01no338_k01.g1 PHD_FILE: MSMg01no338_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTGACACAACACTAATGCTGTCTTACTATACATACACACCTCCCCNNG
TGCTCTTTTGCACCATATAATACTCTGTCTCTTCACTTTNTAATCATAAA
TATATATTCTCCAACCTACCAAAACATCTATATATATTATTTCCTCCCAT
CTTATCACATCATTCATAGCATTATACAATAACTTTTACTCCCCTCTCTA
CTTTATACCCATGCTAACACTACAATAATCACAATTACAACATCATCTCA
CGTTATCCAACATACGATACACGTCGCCTATACGTACGTATTATACGCGA
CGTTTTCGTCNCGTAACCTCCGTCACGTATAACTCTCGTCAATATACTAT
TACTCCGTATATCTTATTTACATATAATATAAATAATAATTTATTATTAT
TTACTTCTTCTTTTATCCCCTCACTTTCTACTACACTCTACAGACACACA
TCCCATAACAAAGACCAAACAACNCGCTCTTTCTCTATCACAATGTCTCT
CCATATATAACATATAATTATATATATATAGTAAATATACTTCATATATA
AAATAAACCAACATCCATATGCATATCTATATTATTTCATTACAACATCA
TACTACATCAATATATCTCATCATAACTCTCTACCTAAATCACTAATAAC
TATATATATCACCCTCACTTACCACTACCCTATCATATACATATATAATA
CACACTATCTATCATTATTTACTTATTATNATTAATCCTATTCTCTCAAT
TCTATACATCTTATCTANACTCTATTCATTCTATCTAATGTACATATCAT
ANTACTATAACATCCATATCCCTCCTACTCACAACATCTCATCACACTCT
ATATCATATATATAATTCATTTACACTTATATTCTCACTATCTATCATCA
TCTTCTCACTTCTCTCTTCTAATTATTGACACTAACTCATCATCATTATN
ACATATTATCTCTCTTTATATTTATTATCACTCTCTAATACCTCCCATAA
CAATACCCTCTTCTGTCACTCTCTCATCTATCTTACCATCTATACCTCTC
TACATCACACACTATCAATACTCACATATAGCTACACATATATTACATCA
TCTACTACTCACTCATATTCCAATATCTATATACCACTCACACTTATACT
TACTCACATTACTACACAGACTNCATCCATATACCACATCATATATACAT
CAACCATATATAATAATCACCACGCTACATATATCTCACTATCATCTATA
TATTCACTACTCCACTCATTTCTCCCNCTCTCATTATTTCTCCACATACA
GCTATATACNCTCTATCACATNCTATATATATATATTCTCAACACAGCG
GTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTGGGATGTCGGCAGGGATTGCTTTGAAGTTCCCCT
TCTAAGACAAGGGTGTCCTTTTATATATCACCCCGGTTCATACCAGGTCC
TTGCGGTCTGTCAAAACAAGCCTGCAAAAGGACTTTTGCTAATAAGTCAC
ACGCACCATGAAGTTGAAAGAAAGCTTGCCCGTTTGGCCTAGAAACATTT
TGTGCATAAAAAGTACCCCTGGGAGGCAGAGGCAGAGATAGGCAGAAAAG
GGAAACACTGCTGGCTTTTTTTACTAGATTCTGCTCTTTTGTGCGGTACC
TGGCTTAGGAGTCAAACAGATTACACACACGAGGAGCATTAGTAAGCCCG
GGCATGAGAGCATCCAGCCTGGCAGGGAGGCTTTATAGAACTCTGCTTCT
CTCCATCGGGAGCTGCTGTAAGATCCTTACCCCCACCCCCCACCCCCCAG
TCCTCCTGTCAGTGCTCTTGGTTTTCAATAATTGTGAAAGTTCCTCTTTT
GCACAAGGATTTACATCTTGGCTTTGCCAAAATCATCCTGAATTTAAGCT
GTAACTATAAAAAGTCCCTATCGAACGAAAATCGGATTTTTCTGACTCAT
ATTATGTTAAAAAGCGTTTTTTCCTCTCTCATTTACAAAAATGTGATTTT
TTTTTTTTTTTGTATACTGCATTTATTATTTCTAGTGCAAAAACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_k01.g1 MSMg01no338_k01.g1 CHROMAT_FILE:
MSMg01no338_k01.g1 PHD_FILE: MSMg01no338_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:18 2005
         (244 letters)



>mm_chr10_44344960_44345603
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcggcagggattgctttgaagttccccttctaagacaagggtgtccttttatatatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtcggcagggattgctttgaagttccccttctaagacaagggtgtccttttatatatca 260

                                                                       
Query: 61  ccccggttcataccaggtccttgcggtctgtcaaaacaagcctgcaaaaggacttttgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccggttcataccaggtccttgcggtctgtcaaaacaagcctgcaaaaggacttttgct 320

                                                                       
Query: 121 aataagtcacacgcaccatgaagttgaaagaaagcttgcccgtttggcctagaaacattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataagtcacacgcaccatgaagttgaaagaaagcttgcccgtttggcctagaaacattt 380

                                                                       
Query: 181 tgtgcataaaaagtacccctgggaggcagaggcagagataggcagaaaagggaaacactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgcataaaaagtacccctgggaggcagaggcagagataggcagaaaagggaaacactg 440

               
Query: 241 ctgg 244
           ||||
Sbjct: 441 ctgg 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)