Query= MSMg01no338_l04.b1 MSMg01no338_l04.b1 CHROMAT_FILE:
MSMg01no338_l04.b1 PHD_FILE: MSMg01no338_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:23 2005
(658 letters)
>mm_chr10_45442085_45443142
Length = 1058
Score = 1100 bits (569), Expect = 0.0
Identities = 635/659 (96%), Gaps = 6/659 (0%)
Strand = Plus / Plus
Query: 5 gaattcttgcc-gtccagatactagctcgggcgagatccagcaataccattcttggccat 63
||||||||||| || ||||||||||| |||||||||||||| ||||||| ||||| |||
Sbjct: 201 gaattcttgccggt-gagatactagcttgggcgagatccagcgataccatccttggtcat 259
Query: 64 atctccaaaggatgcctcatcttaccacagggacacctatcatgctaattgttgctatat 123
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atctccaaaggatgcttcatcttaccacagggacacctatcatgctaattgttgctatat 319
Query: 124 tcatgatagccaaaaattgcaaatagcctagatgcccttcaacagaagaatggataaaga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcatgatagccaaaaattgcaaatagcctagatgcccttcaacagaagaatggataaaga 379
Query: 184 aaatggggtgttgtgggttcgtattttgccttactactggtgtgtgtggatgcccctgga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaatggggtgttgtgggttcgtattttgccttactactggtgtgtgtggatgcccctgga 439
Query: 244 cagttgaaacacggaggcacttggctacattctattctcactattctcactgccatcggg 303
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cagttgaaacacagaggtgcttggctacattctattctcactattctcactgccatcggg 499
Query: 304 atgcgggactcttgaaatgcagacacctgctcagtggtgttggaacatagcctgagatgg 363
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 500 atgcgggactcttgaaatgcagacacctactcagtggtgttggaacatagcctgagatgg 559
Query: 364 gagccccagcccgggtgagaaatggtgcaggctgtggccaaggttgtggttcccaaactc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gagccccagcccgggtgagaaatggtgcaggctgtggccaaggttgtggttcccaaactc 619
Query: 424 ctggacacccagacactgctgggaaccacaaggagttg----tgggcctgtgggcctgag 479
|||||||||||||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct: 620 ctggacacccagacactgctgggaaccacaaggagttgacaatggggcggtgggcctgag 679
Query: 480 atgaactcaaggcagggaggaggggtgtgtgtgtgtgggaaggaggcaggttcatgaagg 539
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 680 atgaactcaaggcagggaggagaggtatgtgtgtgtgggaaggaggcaggttcatgaagg 739
Query: 540 gaatccagcttagctaagggtgagtgccaagttttgggggcaggagggagggtcttcagt 599
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 740 gaatccagctttgctaagggtgagtgccaggttttgggggcaggaggaagggtcttcagt 799
Query: 600 gggacacttagatggcagggcttgataatgaagccttctccccatggcagttcttgatg 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tggacacttagatggcagggcttgataatgaagccttctccccatggcagttcttgatg 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_l04.g1 MSMg01no338_l04.g1 CHROMAT_FILE:
MSMg01no338_l04.g1 PHD_FILE: MSMg01no338_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:23 2005
(617 letters)
>mm_chr10_45587926_45588942
Length = 1017
Score = 915 bits (473), Expect = 0.0
Identities = 556/619 (89%), Gaps = 56/619 (9%)
Strand = Plus / Minus
Query: 1 tagtcagctcaaatccaaagaggaaattgccctgttgcttccatagagtctaaggcgtct 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 778 tagtcagctcaaatccaaagaggaaattgtcctgttgcttccatagagtctaaggagtct 719
Query: 61 aggattccctttgctcttaagcacagaggtaaatgaaagactcagatggaaaccacagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 aggattccctttgctcttaagcacagaggtaaatgaaagactcagatggaaaccacagtg 659
Query: 121 gtgattgcctcagtgtggtcttcagaactacaacacagggggaaatacaaagagggaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gtgattgcctcagtgtggtcttcagaactacaacacagggggaaatacaaagagggaaaa 599
Query: 181 gcaatggaaaaccatagttaaatagtaacaggtacacatagcttgcatgggccacagatg 240
|||||||||||||||||||||||| |||||
Sbjct: 598 gcaatggaaaaccatagttaaatactaaca------------------------------ 569
Query: 241 aaaccatagttaaatagtaacgggtactcatagcttgcatgctacagataaaaccatagt 300
||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ----------------------ggtactcatagcttgcatgctacagataaaaccatagt 531
Query: 301 taaatagtaatgggtgca--catagcttgcatgctacagataaaaccatagttaaatagt 358
||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| |
Sbjct: 530 taaatagtaattggt--agtcatagcttgcatgctacagataaaaccatagttaaatact 473
Query: 359 aatgggtacacatagcttgcatgctacacataaggcagaagggactgctggagagcaagt 418
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 472 aatgggtacacatagcttgcatgctacacataagccagaagggactgctggagagcaagt 413
Query: 419 ctgaacctcattactgctgacataagtaataagggtccccaattaacaaaaaagagtcct 478
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 412 ctgaacctcattactgctgacataagtaataagggtcctcaattaacaaaaaagagtcct 353
Query: 479 aaagttctaataacagaaacggtctgattcctatgcacatgaattagaacagtataaaac 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aaagttctaataacagaaacggtctgattcctatgcacatgaattagaacagtataaaac 293
Query: 539 agccagagaaaaagaactcatggagaaaccaaagagctaccaaacatgaactaccagaac 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 agccagagaaaaagaactcatggagaaaccaaagagctaccaaacatgaactaccagaac 233
Query: 599 cagagtacaacatagacca 617
|||||||||||||||||||
Sbjct: 232 cagagtacaacatagacca 214
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
