Query= MSMg01no339_f09.b1 MSMg01no339_f09.b1 CHROMAT_FILE:
MSMg01no339_f09.b1 PHD_FILE: MSMg01no339_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:08 2005
(557 letters)
>mm_chr10_8548395_8549351
Length = 957
Score = 1054 bits (545), Expect = 0.0
Identities = 554/557 (99%)
Strand = Plus / Minus
Query: 1 cagctgctctgaatgcttccaagaacaaaagagaagtttcctgagtactgatatagaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cagctgctctgaatgcttccaagaacaaaagagaagtttcctgagtactgatatagaaag 508
Query: 61 acacgaggaagcatgtggtgtttggctttgaaatgtggcgcttgtaccatggctacttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 acacgaggaagcatgtggtgtttggctttgaaatgtggcgcttgtaccatggctacttca 448
Query: 121 gtcactaatgagttctcagagcaaagatcctccccacaacagatttaaggcgttaattac 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gttactaatgagttctcagagcaaagatcctccccacaacagatttaaggcgttaattac 388
Query: 181 aggaggattattactattgaagaaaagataaggccgaatttttaaaggaagtagctcagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aggaggattattactattgaagaaaagataaggccgaatttttaaaggaagtagctcagt 328
Query: 241 gtgtcagaatatcgctctggttttcctgatgaaaattagagacgggaggaaaacatttag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtgtcagaatatcgctctggttttcctgatgaaaattagagacgggaggaaaacatttag 268
Query: 301 cctgtgaacccagaaatggtgatatcttataactccagtaaaacatggagctgttttgtt 360
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 267 cctgtgaacccagaaatggcgatttcttataactccagtaaaacatggagctgttttgtt 208
Query: 361 aactttgttttgtttattgtgagataggagcttactgtttagcccaggctagccccaaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 aactttgttttgtttattgtgagataggagcttactgtttagcccaggctagccccaaac 148
Query: 421 ttgagctctaatctcagcagtggagaggctgagactggaagtttacaaatttgatattag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 ttgagctctaatctcagcagtggagaggctgagactggaagtttacaaatttgatattag 88
Query: 481 cctgggctacatattgggactctctctcaaaggtagggaaagaagaggaagaagaggagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 cctgggctacatattgggactctctctcaaaggtagggaaagaagaggaagaagaggagg 28
Query: 541 agggggaagaggaggaa 557
|||||||||||||||||
Sbjct: 27 agggggaagaggaggaa 11
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_f09.g1 MSMg01no339_f09.g1 CHROMAT_FILE:
MSMg01no339_f09.g1 PHD_FILE: MSMg01no339_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:09 2005
(510 letters)
>mm_chr10_8482100_8483005
Length = 906
Score = 878 bits (454), Expect = 0.0
Identities = 485/508 (95%), Gaps = 22/508 (4%)
Strand = Plus / Plus
Query: 1 cagagaaagaaagaaagaactcgagaatctgagcgaatccgggacagagggctaaccctt 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 219 cagagaaagaaagaaagaacgcgagaatctgagcgaatccgggacagagggctaaccctt 278
Query: 61 ccgagtgactgaacccttccgagtgactgaactctaaaacagatcgcttctgcagatggg 120
|||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 279 ccgagtgactgaac------------------tctaaaacagatcgcttctgcagatggg 320
Query: 121 cttccgaacgctccctgaggggcgtggtcaccattgaaagtggacacctttccagggcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttccgaacgctccctgaggggcgtggtcaccattgaaagtggacacctttccagggcta 380
Query: 181 tttttgaaattactatcatggagcttgtgattctggtttttctccctgacttatcatttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttgaaattactatcatggagcttgtgattctggtttttctccctgacttatcatttt 440
Query: 241 ctccctctccccattcccccccccaccccctttctgttttaatagccagagtaaatgtag 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctccctctccccat-cccccccccaccccctttctgttttaatagccagagtaaatgtag 499
Query: 301 gcgatttcccctttcctggggcttctaaaactgtcttcccaaattgttccgaccgtcatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gcgatttcccctttcctggggcttctaaaactgtcttcccaaattgttccgaccgtcatt 559
Query: 361 tcagggcagctgagttctcgggcattctggaacagcaagcctggggactatgtcacatga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcagggcagctgagttctcgggcattctggaacagcaagcctggggactatgtcacatga 619
Query: 421 ttgtttaatcttcttggggagtcccaggggagcaccaggcacatgctgttactgaaacag 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttgtttaatctt---ggggagtcccaggggagcaccaggcacatgctgttactgaaacag 676
Query: 481 gacataggctaaacaagacagagctgaa 508
||||||||||||||||||||||||||||
Sbjct: 677 gacataggctaaacaagacagagctgaa 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 906
Length adjustment: 10
Effective length of query: 500
Effective length of database: 896
Effective search space: 448000
Effective search space used: 448000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
