Query= MSMg01no339_j01.b1 MSMg01no339_j01.b1 CHROMAT_FILE:
MSMg01no339_j01.b1 PHD_FILE: MSMg01no339_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:25 2005
(595 letters)
>mm_chr10_36245189_36246183
Length = 995
Score = 1007 bits (521), Expect = 0.0
Identities = 564/591 (95%), Gaps = 20/591 (3%)
Strand = Plus / Plus
Query: 5 gaattcttgaaatgacctctgtatcctacgttcacacatgaagaagttccaccttaagga 64
|||||||||||| || ||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 205 gaattcttgaaaggagttctgtatcctacgtttacacatgaagaagttccaccttaaaga 264
Query: 65 aatgattcaaaggtgaacagctaagaattgaactcctgtcttacatgttgcataaatata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatgattcaaaggtgaacagctaagaattgaactcctgtcttacatgttgcataaatata 324
Query: 125 tggtccctgctctgctattgcctacacttataaatgctttgaattctgggaagaatgtag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggtccctgctctgctattgcctacacttataaatgctttgaattctgggaagaatgtag 384
Query: 185 atattcctgcacatggtgcaaacaagcaggtctaagacctcacctctaatatctcactct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atattcctgcacatggtgcaaacaagcaggtctaagacctcacctctaatatctcactct 444
Query: 245 cacattcctgctgatcaaaaaagaatcctttatcacttatcatgtcactaagcatgtttc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacattcctgctgatcaaaaaagaatcctttatcacttatcatgtcactaagcatgtttc 504
Query: 305 aggcaaatttacctattctccttttccagtcccctaaacaaatttattttacaaatttcc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggcaaatttacctattctccttttccagtcccctaaacaaatttattttacaaatttcc 564
Query: 365 cttgtcacttctagataataataataataataataataataataataataataataatga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttgtcacttctagataataataataataataataataataataataataataataatga 624
Query: 425 taatgataatgataatgataataacaacaacaacagtaatggtcccttcattgccgtata 484
|||||||||||||||||||||||||||||||||| |||||
Sbjct: 625 --------------------ataacaacaacaacagtaatggtcccttcattgcagtata 664
Query: 485 tcattctttactctgggtactagaagagatcatactaaattacatcctgacaaatgatca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tcattctttactctgggtactagaagagatcatactaaattacatcctgacaaatgatca 724
Query: 545 gtctcagtgcttcctctcatctcaaaaaaacaaatttcaccttttggctgt 595
||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 725 gtctcagtgcttcctctcatctcaaaaaaactaatttcaccttttggctgt 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_j01.g1 MSMg01no339_j01.g1 CHROMAT_FILE:
MSMg01no339_j01.g1 PHD_FILE: MSMg01no339_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:25 2005
(246 letters)
>mm_chr10_36473273_36473918
Length = 646
Score = 437 bits (226), Expect = e-127
Identities = 241/246 (97%)
Strand = Plus / Minus
Query: 1 ttgcttacttcctgctgtgctcatccccctaggcttcccagatctccccctgcccccaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ttgcttacttcctgctgtgctcatccccctaggcttcccagatctccccctgcccccatg 348
Query: 61 ccttattcagtatccagaatgactggggtaggatcttaattgtcagcgatctatttcccc 120
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 347 ccttattcagtatccagaattactggggtaggatcttaattgtcagtgatctatttcccc 288
Query: 121 ttctggcctagctaactttttcttaagtctaagtaatggtttcttttaccttaatgaatg 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ttctggcttagctaactttttcttaagtctaagtaatggtttcttttaccttaatgaatg 228
Query: 181 cttttcattctaattttggtactatgtcttccttccttccttccttccttccttccttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 cttttcattctaattttggtactatgtcttccttccttccttccttccttccttccttcc 168
Query: 241 ttcctt 246
||||||
Sbjct: 167 ttcctt 162
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
