TTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAAATATTTTTCACATTTTGGACAGATTGTAAACAGAATGGCAG
ATAAACAGTTCTTAACATTTTGTGATTTTTTTTATGTCTATTCAATTGTA
ATTTCTTTCTGAGTTTTTAATATATTCTATGAAGATTCAATAGAAAATGT
ATGTTGCAACTGTTTCATTAATAAAAAAATGGAGAACATTACTTCCAATG
TGTGTAAAACTACATCTGTCACCTTTTAAATATTTACTTATAGGATATCA
AAGGACAACATAAGTCAGAATTCATGAGAAATATTTCATTTTTAAAATTT
TTGTGTTTCAATTTTATTTGACTCCACATTTCTGTGGTGATTATTTTAAA
GATCATTCCATCTTATTTCAAGAATACATTTTTAAAATTTTTACTCATTT
AAAAGAATGAGGATTTTAAAAAGGAGGTTTAATTTCAAATCCAGCATGCC
ATAACATCTCTAGACTCTGTAAGAGTTCTGGGTTGCTGCATTTTTAGATA
AATCATAATAGTTTGCTGAGCTCTTCAAATTTGATTATGAAGTCCATTAC
AATTATGTACTTACATAACGAAATACAGTATAAATTTCTCAAGAAAGTTT
TTATTTTTTAAACAAGAATTATTTATTTGATAATAAAAATAAATATTAGG
GGAAACTTAAGCTTAGAAACTCTTACAATGGGAAAAAAAATAAAGTTTCC
CCTTCTTTCCAGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTGTTAAAAGAACTTCTGGCGGAATCACCATGCCAGACCTAAA
GCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAG
ACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCA
CACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTG
GAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTAT
CGTGTAGAAGAATGCAAATCGATCCATACATATCTCCTTGTACTAAGGTC
AAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACT
TATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAA
AATTCCTGAACAGATCAGCAATGGCTTGTGCTGTAAGATCGAGAATTGNA
AAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGT
CAATANGACAAAAAGACACCACCAGATTGGGAAAGGATCTTTATCTATCC
TTAATCAGATAAGGGGACTAATATCCCACTTATATAAGGAACTCCCGAAA
GGAGACTTCTGAAAAACCAATAACCTCTTTATAAATGGGGTTCAAAAAAA
AACCCTTAATTTTCTTTGTTGGGGAAAAAAAAATTGGAAATTGGTTTCCC
GGGTAAGGAAAAAAAAAAAA

Query= MSMg01no339_k22.b1 MSMg01no339_k22.b1 CHROMAT_FILE:
MSMg01no339_k22.b1 PHD_FILE: MSMg01no339_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:34 2005
         (569 letters)



>mm_chr10_100990475_100991444
          Length = 970

 Score = 1038 bits (537), Expect = 0.0
 Identities = 560/569 (98%), Gaps = 7/569 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaatatttttca--cattttggacagattgtaaacagaatggcagataaacag 62
           |||||||||||||||  ||  |||||| ||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaatattt--cagacattttagacagattgtaaacagaatggcagataaacag 262

                                                                       
Query: 63  ttcttaacattttgtgattttttttatgtctattcaattgtaatttctttctgagttttt 122
           |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 263 ttcttaacattttgtgattttttt-atgtctattcaattgtaatttctttatgagttttt 321

                                                                       
Query: 123 aatatattctatgaagattcaatagaaaatgtatgttgcaactgtttcattaataaaaaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aatatattctatgaagattcaatagaaaatgtatgttgcaactgtttcattaataaaaaa 381

                                                                       
Query: 183 atggagaacattacttccaatgtgtgtaaaactacatctgtcaccttttaaatatttact 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atggagaacattacttccaatgtgtgtaaaactacatctgtcaccttttaaatatttact 441

                                                                       
Query: 243 tataggatatcaaaggacaacataagtcagaattcatgagaaatatttcatttttaaaat 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tataggatatcaaaggacaacataagtcagaattcatgagaaatatttcatttttaaaat 501

                                                                       
Query: 303 ttttgtgtttcaattttatttgactccacatttctgtggtgattattttaaagatcattc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttttgtgtttcaattttatttgactccacatttctgtggtgattattttaaagatcattc 561

                                                                       
Query: 363 catcttatttcaagaatacattttt-aaaattttt-actcatttaaaagaatgaggattt 420
           ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 562 catcttatttcaagaatacattttttaaaattttttactcatttaaaagaatgaggattt 621

                                                                       
Query: 421 taaaaaggaggtttaatttcaaatccagcatgccataacatctctagactctgtaagagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 taaaaaggaggtttaatttcaaatccagcatgccataacatctctagactctgtaagagt 681

                                                                       
Query: 481 tctgggttgctgcatttttagataaatcataatagtttgctgagctcttcaaatttgatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tctgggttgctgcatttttagataaatcataatagtttgctgagctcttcaaatttgatt 741

                                        
Query: 541 atgaagtccattacaattatgtacttaca 569
           |||||||||||||||||||||||||||||
Sbjct: 742 atgaagtccattacaattatgtacttaca 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 970
Length adjustment: 10
Effective length of query: 559
Effective length of database: 960
Effective search space:   536640
Effective search space used:   536640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)