BAC Information

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BAC

Clone NameMSMg01-339O08
Chromosome10 (Build37)
Map Location 39,073,773 - 39,074,049
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1, EG624165, LOC100040964
Downstream geneFyn, LOC629337, Traf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339O08.T7 (MSMg01no339_o08.b1)MSMg01-339O08.TJ (MSMg01no339_o08.g1)
ACCAG454068AG454069
length765722
length of high quality
(start - end)
502 (71 - 572)510 (58 - 567)
definitionCHROMAT_FILE: MSMg01no339_o08.b1 PHD_FILE: MSMg01no339_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:50 2005CHROMAT_FILE: MSMg01no339_o08.g1 PHD_FILE: MSMg01no339_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTAGGATCCCGAAAGAGAGGGATGGAGGTAAGGCTTTTTTT
TTTTCTCATTGATTCTTTTTCCCAAAGTCTATCTTGTGAGTCCTTCTAGC
AAACTCCCAATAAAAGGCTTGTCCTTGACATTGAACCTCTTCTTTGTGAT
GTAAGCTGACTATATTAACACAAGAAGGCATTCCTTGGAGCGTGATTCTG
TCCTGTGCGGCTGTTCTGTGGAACAGGAGGCAGTTGTTTTCCGTCCAACT
TCTCCCACACCGAAGTGCATGCCTCCACCTCATGGAAGACTCGATGGATA
TGGACATGAGTCCTCTTAGGCCTCAGAACTACCTTTTTGGCTGTGAACTA
AAGGCTGACAAAGACTATCACTTTAAAGTGGATAATGATGAAAATGAGCA
CCAGTTGTCGTTAAGAACGGTCAGTTTAGGAGCAGGGGCAAAAGATGAGT
TACACATCGTAGAGGCAGAAGCAATGAACAGTCAAAAGGCAGTCCAATTA
AAGTCACACTGGCAACTTTGAAAATGTCTGTACAACCAACAGTTTCCCTT
TGGGGGCTTTGAAATTACACCTTCCTGTGGTCTTACAGGTGAAAGTGTAA
TTTCAAGGCTTTGTGTTCCTTTATTGGACAACATTTTATTAACTGTTAAA
GCAAAATGCCCAAGCTCTGAATAATCAACAACGAAGAGGCATGTTTAAAT
TCTTTAAGCTTTTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCTCAGATTCCTGAACATCTATGTAAGTTGAAGCAAAAATGTG
TTTCTAGCATTTCTGAAAAGAAATGTTATTATTTTACCTGAAAATCCTAT
TCATTCTCATTTTCTTAGCCCATGGTATCTCCTTCCTTAGGTTTAGCTCA
GCTTCAGGCAGGAGGGTGGTAGATGTCAATTTAGCAAGATATTCATTAAG
ACTGGGCAGCCCCAGGATGCTGCTCCATCTCAGGAGCAGGGCCTCCCGCC
AGGAGAGAACAAACTTCTAGGGGTACCTCAGGGAGATAGGGACATCCTCA
CATGGGCTTTGGTTTTCAAAGCCACTCTTGCCTTTTGAAGCAGAGGGAGA
AGAGGATCAGAGAACAGAAGTTCTTTCATAGTTCTTCTAAGCCTGCTTAG
GACTTCACCCCTGCTAAAGCAAGACTGTGTTATACAGTTAGTGAGCTGTT
TTAGTTAATTCAACAAGGCAGGCTAGCCATTCTAAGATTTAAAATCAATG
CCAACACTTAGGCAGCAAAGAGGAAAGATGACCCTACCTATGCTGTTCCC
TGGAAAGGNNGATGGAATTTTTTGCTCACTCACTTGGCAGAAACCTGTGA
GGAAGGATACCCAGTTAATATCCCTGTAAAGGGACTTTTGGAAAAATAAC
TTTGAGGGAGCCTATTCTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_o08.g1 MSMg01no339_o08.g1 CHROMAT_FILE:
MSMg01no339_o08.g1 PHD_FILE: MSMg01no339_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:50 2005
         (510 letters)



>mm_chr10_39073573_39074481
          Length = 909

 Score =  501 bits (259), Expect = e-146
 Identities = 274/279 (98%), Gaps = 3/279 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcagattcctgaacatctatgtaagttgaagcaaaaatgtgtttctagcatttctgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tctcagattcctgaacatctatgtaagttgaagcaaaaatgtgtttctagcatttctgaa 418

                                                                       
Query: 61  aagaaatgttattattttacctgaaaatcctattcattctcattttcttagcccatggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aagaaatgttattattttacctgaaaatcctattcattctcattttcttagcccatggta 358

                                                                       
Query: 121 tctccttccttaggtttagctcagcttcaggcaggagggtggtagatgtcaatttagcaa 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 357 tctccttccttaggtttagctcagcttcaggcaggagggtgggagatgtcaatttagcaa 298

                                                                       
Query: 181 gatattcattaagact-gggcagccccaggatgctgctccatctcaggagcagggcctcc 239
           |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 297 gatattcattaaga-tggggcagccccaggatgctgctccatctcaggagcagggcct-c 240

                                                  
Query: 240 cgccaggagagaacaaacttctaggggtacctcagggag 278
           |||||||||||| ||||||||||||||||||||||||||
Sbjct: 239 cgccaggagagagcaaacttctaggggtacctcagggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 909
Length adjustment: 10
Effective length of query: 500
Effective length of database: 899
Effective search space:   449500
Effective search space used:   449500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)