Query= MSMg01no339_p17.b1 MSMg01no339_p17.b1 CHROMAT_FILE:
MSMg01no339_p17.b1 PHD_FILE: MSMg01no339_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:56 2005
(623 letters)
>mm_chr10_33919922_33920946
Length = 1025
Score = 1129 bits (584), Expect = 0.0
Identities = 614/625 (98%), Gaps = 2/625 (0%)
Strand = Plus / Minus
Query: 1 accctttcttctagcagtttagtgacatcattccaggaattgtaaatcaggctcctttct 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 accctttcttctagcagcttagtgacatcattccaggaattgtaaatcaggctcctttct 766
Query: 61 ccagccccagggacaatgagacaggggccagctggcttttggaactacttgctgtggttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ccagccccagggacaatgagacaggggccagctggcttttggaactacttgctgtggttc 706
Query: 121 tactccttccaagggatgggataaaccaggcggggaagaaaaagtaggaaaactgaatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 tactccttccaagggatgggataaaccaggcggggaagaaaaagtaggaaaactgaatag 646
Query: 181 cta--ttttttaaattttcacctaggaaaaagaaagggaaacagacatgaggctatctgc 238
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ctattttttttaaattttcacctaggaaaaagaaagggaaacagacatgaggctatctgc 586
Query: 239 tgacataagatttctgctgaccacagcaagagtttcctgatgtttttatcccttagtatg 298
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tgacataaggtttctgctgaccacagcaagagtttcctgatgtttttatcccttagtatg 526
Query: 299 atttctgtagggttttgagttctttgggaaggttttcatcctgaaaaaatatgaagtgtg 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 atttctgtagggttttgagttctttgggaaggttttcatcctgaaaaaatatgaagtgta 466
Query: 359 gtcatctgggtgtgacttctgttcatctgaaaacatgaaaattcaagaaaataagaatga 418
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 465 gtcatctgggtgtgacttctgttcatctgaaaacatgaaaattcaggaaaataagaatga 406
Query: 419 tttatttagatgaatataaaaaatagtcagttttattactttaaatgaaagttgctgcta 478
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 405 tttatttagatgaatataaaaaatagtccgttttattattttaaatgaaagttgctgcta 346
Query: 479 cagatttttccttagcatttttactagatctagtggtaattggccggttaaagtaatcct 538
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 345 cagatttttccttagcatttttactagatctagtggtaattggccagttaaagtaatcct 286
Query: 539 gattatataaagtttctagagccttcattcangcagacactgtatgctttacttttttct 598
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 285 gattatataaagtttctagaaccttcattcaggcagacactgtatgctttacttttttct 226
Query: 599 tcaaggaggccatttttttcttcat 623
|||||||||||||||||||||||||
Sbjct: 225 tcaaggaggccatttttttcttcat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1025
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1015
Effective search space: 622195
Effective search space used: 622195
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_p17.g1 MSMg01no339_p17.g1 CHROMAT_FILE:
MSMg01no339_p17.g1 PHD_FILE: MSMg01no339_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:56 2005
(557 letters)
>mm_chr10_33752954_33753908
Length = 955
Score = 870 bits (450), Expect = 0.0
Identities = 538/580 (92%), Gaps = 26/580 (4%)
Strand = Plus / Plus
Query: 1 aactctggtcatcaggcttagctgcaactgccatccctcgagctctaaaatgtggtcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 aactctggtcatcaggcttagctgcaactgccatccctcgagctctaaaatgtggtcttt 238
Query: 61 ttttcttttcttccttttttattatttttttttctattttgttgttgttttcttttgttt 120
|||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||
Sbjct: 239 ttttcttttcttccttttttatta-tttcttttctattttgttgttgttctcttttgttt 297
Query: 121 ctctgagacagagtttttctgtgcagtcctggctgtcctgaaactggctctgtagaccag 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ttctgagacagagtttttctgtgcagtcctggctgtcctgaaactggctctgtagaccag 357
Query: 181 ccgggcctcgaactcagaga--tgcccctgc-----cccctgc-----cccctgc----- 223
| ||||||||||||||||| ||||||||| ||||||| |||||||
Sbjct: 358 gctggcctcgaactcagagatctgcccctgcccctgcccctgcccctgcccctgcccctg 417
Query: 224 cccctgc------ccctgcctcccaagagcttggattaaaggcaagtgccaccaggccgg 277
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 418 cccctgcccctgtccctgcctcccaagagcttggattaaaggcaagtgccaccacgccgg 477
Query: 278 gctagaatgtgctttcttgatggcagcaaataaaaaatcttaaccaaaatgtgcaggaaa 337
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 478 gctagaatgtgctttcttgatggcagcaaat--aaagtcttaaccaaaatgtgcaggaaa 535
Query: 338 ttttatgcagcaactgtctattttctaaattggctagatttactacacatcttccaaaca 397
|| |||||||| | ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ttctatgcagcggccgtcgattttctaaattggctagatttactacacatcttccaaaca 595
Query: 398 ctttcctcaaccaatgctcactgtatccctggaacagggtctcttttgacactggttgca 457
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 596 ctttcctcaacccatgctcactgtatccttggaacagggtctcttttgacactggttgca 655
Query: 458 gggaccttgcacaggaggccaggtgagaggatgtgagacagacttgctggcaactgtcgc 517
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 656 gggacctagcacaggaggccaggtgagaggatgtgagacagacgtgctggcaactgtcgc 715
Query: 518 ctaggtttcattccagtgtgggggaagtccttgatccacc 557
||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 ctaggtttcattccagtgtgggggaagtccttgatccacc 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 955
Length adjustment: 10
Effective length of query: 547
Effective length of database: 945
Effective search space: 516915
Effective search space used: 516915
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
