BAC Information

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BAC

Clone NameMSMg01-340A06
Chromosome10 (Build37)
Map Location 6,122,511 - 6,295,814
singlet/doubletdoublet
Overlap geneMthfd1l
Upstream geneSyne1, Esr1, LOC100041310, Gm221, 1700052N19Rik, Rmnd1, Zbtb2, Akap12
Downstream genePlekhg1, Iyd, Ppp1r14c, EG666520, LOC100039303, LOC670558, LOC626333, LOC666541, 9230019H11Rik, LOC100041405, LOC672213
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340A06.T7 (MSMg01no340_a06.b1)MSMg01-340A06.TJ (MSMg01no340_a06.g1)
ACCAG454159AG454160
length743746
length of high quality
(start - end)
562 (48 - 609)498 (79 - 576)
definitionCHROMAT_FILE: MSMg01no340_a06.b1 PHD_FILE: MSMg01no340_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:58 2005CHROMAT_FILE: MSMg01no340_a06.g1 PHD_FILE: MSMg01no340_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,122,511 - 6,123,068)(6,295,317 - 6,295,814)
sequence
NCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAGCTCTGCCTGCACAATGCCTGCCTGGAAGCTGCCATGCTC
CTGCCTTGATGATAATGGACTCAACCTCTGAACCTGTAAGCCAACCCCTA
TTAAATGTTGTCATTTATAAGAGTTGCCTTGGTCATAGTGTCTGTTCACA
GCAGTAAACCCAAACTAAGACACTGAGAGAATTGAGCCTAAAAACGAGGC
CAACTAAGGTCTCATGTAATAGCCCTCTTTATTCAGAGCATATAATAATT
TATGCTCTGATGGTTAAGAGAGAGTCATATGAATAAAGTATACAATCACA
AGGGTAAGCAGCATGTGACAGATGAAAGCCACATACAGCGAAAACATGTT
TTCTGTAGAGGTTTATAAACAAATAACAATAGCCAGTTATAATAAATATA
TGAAGTGAACTCCCTCCTATCAGCTATACCTGAGAGGGGCATGGAAGCAC
ACTCTAAGAATGACTTTGTGATCTGAAGAAACGGGGTTCCCAAGACTCTT
GCCTTGTTTTCTTGTCATTCTCTCACAAGCATTCAGAATTCTCCTCCCAT
AATGCCATTCTTGGACCATGACTCTGATCTTAGACTGTATTCTCACAAAT
CACCAACTAGGAACCAAGGATTCAATGGCTGAATTATGGGATACATCCCT
GTCAAACCACCTCAANCCTTTGGACCAAAATTCCGAGAGAAAA
NCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTATAGTGAGAGCCTGTCTCAAA
AGAATCACAGTTGGGAGGTAGCTCAGTGCTACAGTGCTTGCCTTGGTCTA
GCAAAACAAGTAGTAAGGAAGCAAATAGACATTACTGAACCTTTAAGCCA
TCTTCCTCTCTGTGAGTCTAATTTCATTTGTCCTAAGCAATGCTTACTAC
ATTCACATCGTGTCTAATTTTCATTTATGGTATTGACCGTTTTAAGATTA
TTTGGACAGAAAATGTATTTTTAAGAACAAAGCATAGAATTTGGTTAAGA
TGTTCTCATGCGTGAACTCTGTGAGTTCCTTGATTCTTAGATACACATTT
GGGAAGGGCTTCTAGAATCAGTGACATAGGAGCCTGTATCCATGGACAGC
CTAAGCATCTCATTTGTGGGCAGTGTCTTGTTTTGGACACCCCCTTGCTA
GTGTCATAGGAGAGCGTTGGGTACCCCCTGCCTCACTACAGGTGGCCATG
ATGCCAGCAGTTTTCAGTCTGAAGACTTTGGTAGATTCTGGGATACTGAT
TGATATCATGTTCCACCATAGACTAGGAGGAGCAGAAGTCTTGGTGATAA
AGGTATAAGGCCTGGAAGATTCTGTGAAGCCTTGTCCAGAGCCAAACTGT
GAACCCACTGATGACTTAACATGGGGAAAGTAACCCAAAAAGCGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_a06.b1 MSMg01no340_a06.b1 CHROMAT_FILE:
MSMg01no340_a06.b1 PHD_FILE: MSMg01no340_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:58 2005
         (562 letters)



>mm_chr10_6122307_6123268
          Length = 962

 Score = 1048 bits (542), Expect = 0.0
 Identities = 554/558 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcagctctgcctgcacaatgcctgcctggaagctgccatgctcctgccttgatg 64
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 205 gaattctcagctctgcctgcacaatgcctgcctggacgctgccatgctcctgccttgatg 264

                                                                       
Query: 65  ataatggactcaacctctgaacctgtaagccaacccctattaaatgttgtcatttataag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ataatggactcaacctctgaacctgtaagccaacccctattaaatgttgtcatttataag 324

                                                                       
Query: 125 agttgccttggtcatagtgtctgttcacagcagtaaacccaaactaagacactgagagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agttgccttggtcatagtgtctgttcacagcagtaaacccaaactaagacactgagagaa 384

                                                                       
Query: 185 ttgagcctaaaaacgaggccaactaaggtctcatgtaatagccctctttattcagagcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgagcctaaaaacgaggccaactaaggtctcatgtaatagccctctttattcagagcat 444

                                                                       
Query: 245 ataataatttatgctctgatggttaagagagagtcatatgaataaagtatacaatcacaa 304
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgataatttatgctctgatggttaagagagagtcatatgaataaagtatacaatcacaa 504

                                                                       
Query: 305 gggtaagcagcatgtgacagatgaaagccacatacagcgaaaacatgttttctgtagagg 364
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gggtaagcagcatgtgacagacgaaagccacatacagcgaaaacatgttttctgtagagg 564

                                                                       
Query: 365 tttataaacaaataacaatagccagttataataaatatatgaagtgaactccctcctatc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttataaacaaataacaatagccagttataataaatatatgaagtgaactccctcctatc 624

                                                                       
Query: 425 agctatacctgagaggggcatggaagcacactctaagaatgactttgtgatctgaagaaa 484
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 625 agctatacctgagaggggcatggaagcacactctaagaatgactttgttatctgaagaaa 684

                                                                       
Query: 485 cggggttcccaagactcttgccttgttttcttgtcattctctcacaagcattcagaattc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cggggttcccaagactcttgccttgttttcttgtcattctctcacaagcattcagaattc 744

                             
Query: 545 tcctcccataatgccatt 562
           ||||||||||||||||||
Sbjct: 745 tcctcccataatgccatt 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no340_a06.g1 MSMg01no340_a06.g1 CHROMAT_FILE:
MSMg01no340_a06.g1 PHD_FILE: MSMg01no340_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:58 2005
         (498 letters)



>mm_chr10_6295117_6296014
          Length = 898

 Score =  901 bits (466), Expect = 0.0
 Identities = 490/498 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatagtgagagcctgtctcaaaagaatcacagttgggaggtagctcagtgctacagtgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 698 tatagtgagagcctgtctcaaaagaatcacagttgggaggtagctcagtactacagtgct 639

                                                                       
Query: 61  tgccttggtctagcaaaacaagtagtaaggaagcaaatagacattactgaacctttaagc 120
           ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 638 tgccttggtctagcaaaacaactagtaaggaagcaaatagacactactgaacctttaagc 579

                                                                       
Query: 121 catcttcctctctgtgagtctaatttcatttgtcctaagcaatgcttactacattcacat 180
           |||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 578 catcctcctctctgtgagtctaatttcatttgtcctaagcaatgcttagtacatttacat 519

                                                                       
Query: 181 cgtgtctaattttcatttatggtattgaccgttttaagattatttggacagaaaatgtat 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 518 cgtgtctaattttcatttatggtattgaccgttttaagattatttagacagaaaatgtat 459

                                                                       
Query: 241 ttttaagaacaaagcatagaatttggttaagatgttctcatgcgtgaactctgtgagttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ttttaagaacaaagcatagaatttggttaagatgttctcatgcgtgaactctgtgagttc 399

                                                                       
Query: 301 cttgattcttagatacacatttgggaagggcttctagaatcagtgacataggagcctgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 cttgattcttagatacacatttgggaagggcttctagaatcagtgacataggagcctgta 339

                                                                       
Query: 361 tccatggacagcctaagcatctcatttgtgggcagtgtcttgttttggacacccccttgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tccatggacagcctaagcatctcatttgtgggcagtgtcttgttttggacacccccttgc 279

                                                                       
Query: 421 tagtgtcataggagagcgttgggtaccccctgcctcactacaggtggccatgatgccagc 480
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tagtgtcataggagagtgttgggtaccccctgcctcactacaggtggccatgatgccagc 219

                             
Query: 481 agttttcagtctgaagac 498
           ||||||||||||||||||
Sbjct: 218 agttttcagtctgaagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)