Query= MSMg01no340_f02.b1 MSMg01no340_f02.b1 CHROMAT_FILE:
MSMg01no340_f02.b1 PHD_FILE: MSMg01no340_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:19 2005
(646 letters)
>mm_chr10_30140379_30141428
Length = 1050
Score = 1166 bits (603), Expect = 0.0
Identities = 633/645 (98%), Gaps = 4/645 (0%)
Strand = Plus / Plus
Query: 5 gaattcctgtagtctctgcaccttggaggataagacaggtcacaaataaaaagccactgt 64
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 gaattcctgtagtctctgcaccttggaggataagacagatcacaaataaaaagccactgt 264
Query: 65 ggcattaaggagatcttatctcaaaaaagaaaagcaaaagcatgcagattgctttagatg 124
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 265 ggcattagggagatcttatctcaaaaaagaaaaacaaaagcatgcagattgctttagatg 324
Query: 125 taatgggtcctctgtctacacaagacacaagaccctctctgtcagccagacagcaggcta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taatgggtcctctgtctacacaagacacaagaccctctctgtcagccagacagcaggcta 384
Query: 185 aggtccacacccaattatttctcttgctaaatttagtccagtctgctgttcatttctcct 244
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 385 aggtccacacccaattatttctcttgctaaatttagtccagtctgctgttcacttctcct 444
Query: 245 aagagcagtaagtggtaggataagtcaagttgatagcttggttctcccacttttcagccc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagagcagtaagtggtaggataagtcaagttgatagcttggttctcccacttttcagccc 504
Query: 305 agagtctatttagtctagaaaaataattcgttgagaaaatttgaaaccttttttttg--- 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agagtctatttagtctagaaaaataattcgttgagaaaatttgaaacctttttttttttt 564
Query: 362 -gtcatgatttttgaaagccaacagatttgatcagatctgaattacacaaagtagggaag 420
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 565 tgtcatgatttttgaaagccaacagattcgatcagatctgaattacacaaagtagggaag 624
Query: 421 tcagcctctgggccagccaaactacctgctttctgaaggggtggtttaaaaaaaatcaat 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 625 tcagcctctgggccagccaaactacctgctttctgaaggggtggttaaaaaaaaatcaat 684
Query: 481 tctgtgtggacaagatacaaggtacaaaagatgaattattatgaacagaaatttcacaat 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tctatgtggacaagatacaaggtacaaaagatgaattattatgaacagaaatttcacaat 744
Query: 541 ttaatagtctttagaaaagaaaaatgataaaaattccaaaagtatgttgagaccattcaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttaatagtctttagaaaagaaaaatgataaaaattccaaaagtatgttgagaccattcaa 804
Query: 601 aaaacaaataatgatcacaatactttgtggtaactgtagagcttg 645
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aaaacaaataatgatcacaatactttgtggtaactgtagagcttg 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1050
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1040
Effective search space: 661440
Effective search space used: 661440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_f02.g1 MSMg01no340_f02.g1 CHROMAT_FILE:
MSMg01no340_f02.g1 PHD_FILE: MSMg01no340_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:19 2005
(606 letters)
>mm_chr10_30329862_30330867
Length = 1006
Score = 988 bits (511), Expect = 0.0
Identities = 530/537 (98%), Gaps = 3/537 (0%)
Strand = Plus / Minus
Query: 1 tgcttcttatggtaagtaccagtgtgactggaaataatgcagctcgacattctagaggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tgcttcttatggtaagtaccagtgtgactggaaataatgcagctcgacattctagaggtt 595
Query: 61 gcacaagactgtcttggataggtgctgtgaattgtcctctatgaacttcagcgtgaagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gcacaagactgtcttggataggtgctgtgaattgtcctctatgaacttcagcgtgaagga 535
Query: 121 ctttggcaatactttagcagaaagcagatagtaaaagatctatgactgggaattgattca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ctttggcaatactttagcagaaagcagatagtaaaagatctatgactgggaattgattca 475
Query: 181 tctttgaataattttaatcttatttgatttacatataatctcagacaccttgagaagtaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tctttgaataattttaatcttatttgatttacatataatctcagacaccttgagaagtaa 415
Query: 241 gtcaccagtaaactcttgtgtttcagaatgggtttccatgttcctccattctgttccatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gtcaccagtaaactcttgtgtttcagaatgggtttccatgttcctccattctgttccatc 355
Query: 301 tctcatctgcaccttcatgtgatagcaccagtcaaagagtttggcttcttatcaaagctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tctcatctgcaccttcatgtgatagcaccagtcaaagagtttggcttcttatcaaagctg 295
Query: 361 gtttacaggcaagattcctactggtttgtcacagtaagtagtcccgccacagcaacagca 420
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 294 gtttacaggcaggattcctactggtttgtcacagtaagtagtcctgccacagcaacagca 235
Query: 421 tgccaacagatttaaagtgtctgtccctttttgttttcttttcctttcctttcctttcct 480
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 234 tgccaacagatttaaagtgtctgtccctttttgttttcttttcttttcctttcctttcct 175
Query: 481 ttcctttcctttcctttcctttcctttcctttcctttcctttcctttcctttccttt 537
||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||
Sbjct: 174 ttcctttcctttcctttcctttcctttcctttccttttctttc-ttt--tttccttt 121
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
