Query= MSMg01no340_k01.b1 MSMg01no340_k01.b1 CHROMAT_FILE:
MSMg01no340_k01.b1 PHD_FILE: MSMg01no340_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:40 2005
(449 letters)
>mm_chr10_127740008_127740855
Length = 848
Score = 799 bits (413), Expect = 0.0
Identities = 437/445 (98%), Gaps = 1/445 (0%)
Strand = Plus / Minus
Query: 5 gaattctttgagcgtttcacagaaactggttacccagaattctcccccagcgcaggggac 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gaattctttgagcgaaccagagaaactggttacccagaattctcccccagcgcaggggac 589
Query: 65 gggaggggaaggattagggcaaaggtcaagacgtgttcctgggatgcttacggggaatgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gggaggggaaggattagggcaaaggtcaagacgtgttcctgggatgcttacggggaatgg 529
Query: 125 gtcattaccaagatttctccatggcggatattttggagcgcgtggaattcaaacgagtag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gtcattaccaagatttctccatggcggatattttggagcgcgtggaattcaaacgagtag 469
Query: 185 ggggtagagaaagcgccgtcagctccgcgggaaattccagtttccctactactcccccgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ggggtagagaaagcgccgtcagctccgcgggaaattccagtttccctactactcccccgc 409
Query: 245 ctctagctcaacctaacccaagcaagacggacggttggattggcagccatcgcttccaat 304
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 408 ctctagctcaacctaacccaagcaagacggacgg-tggattggcagccatcgcttccaat 350
Query: 305 cagcaggggccacgggctcatcctagccaatcagaaagagccaggtacaggcagcgcctg 364
|||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 349 cagcgggggccacgggctcatcccagccaatcagaaaaagccaggtacaggcagcgcctg 290
Query: 365 agaaggagagtgacgtagcctccgccaaaacaaggttacggaatgccaccggggacaaac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 agaaggagagtgacgtagcctccgccaaaacaaggttacggaatgccaccggggacaaac 230
Query: 425 tgaatcaggcgcggatctatttggt 449
|||||||||||||||||||||||||
Sbjct: 229 tgaatcaggcgcggatctatttggt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 848
Length adjustment: 10
Effective length of query: 439
Effective length of database: 838
Effective search space: 367882
Effective search space used: 367882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_k01.g1 MSMg01no340_k01.g1 CHROMAT_FILE:
MSMg01no340_k01.g1 PHD_FILE: MSMg01no340_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:40 2005
(522 letters)
>mm_chr10_127556448_127557369
Length = 922
Score = 907 bits (469), Expect = 0.0
Identities = 506/533 (94%), Gaps = 26/533 (4%)
Strand = Plus / Plus
Query: 1 tagacagtgcctcttgtgagtctaacaagatacccatgcgcttttctctccccagcccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tagacagtgcctcttgtgagtctaacaagatacccatgcgcttttctctccccagcccct 237
Query: 61 gcctgacttcacacgcatccctggtttgacactgtccagtagggctttctcagattgctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gcctgacttcacacgcatccctggtttgacactgtccagtagggctttctcagattgctt 297
Query: 121 gaccatcgtggagttccttcacagttttggcaaagtgctaggctttgaccttaccaaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gaccatcgtggagttccttcacagttttggcaaagtgctaggctttgaccttaccaaaga 357
Query: 181 tgttcctagtctaggagtcctgcaggagggactcttatgtcaaggtgacagcttggacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgttcctagtctaggagtcctgcaggagggactcttatgtcaaggtgacagcttggacaa 417
Query: 241 agtgcaggacctgctggtgcggctgctgaaggctgcactccatgatcctggtctgccccc 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 418 agtgcaggacctgctggtgcgactgctgaaggctgcactccatgatcctggtctgccccc 477
Query: 301 ctactgtcaggtgag-tgttcctgg-----------------------tccttgagaaca 336
|||||||||||| || ||||||||| ||||||||||||
Sbjct: 478 ctactgtcaggt-aggtgttcctgggcctgggttacagttttgctctctccttgagaaca 536
Query: 337 cgtaaaagcttcccctaaagcaaccacagaagtaagggaaacgtagttgcttcctgtttc 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 cgtaaaagcttcccctaaagcaaccacagaagtaagggaaacgtagttgcttcctgtttc 596
Query: 397 tagcctttatatgcctttttctttgcaaggcttcatttgttcattttctcttttcttact 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tagcctttatatgcctttttctttgcaaggcttcatttgttcattttctcttttcttact 656
Query: 457 ttgcagtttctctttgtagtctttcacctttttcttttttttttctttttttt 509
|||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 657 ttgcagtttctctttgtagtctttcacctttttctttttttttt-tttttttt 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
