BAC Information

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BAC

Clone NameMSMg01-341H02
Chromosome10 (Build37)
Map Location 79,463,193 - 79,463,573
singlet/doubletsinglet
Overlap geneAbca7
Upstream geneOlfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2
Downstream geneHmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341H02.T7 (MSMg01no341_h02.b1)MSMg01-341H02.TJ (MSMg01no341_h02.g1)
ACCAG455238AG455239
length747550
length of high quality
(start - end)		391 (39 - 429)88 (125 - 212)
definitionCHROMAT_FILE: MSMg01no341_h02.b1 PHD_FILE: MSMg01no341_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:42 2005CHROMAT_FILE: MSMg01no341_h02.g1 PHD_FILE: MSMg01no341_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTXXXXXXXXXXXXXXXXXXXXXXXXXXCTATTCCTAGAGGATCCGCGG
AATTCCAGCCTATCCCATAGGGTCAGATGTTGTCTCAGAATAATGGAATG
GCTCCGTGTGCTGGCACATGCCTTCAGTACCAGCATTGGGGGCAGAGGCA
GGCAGATCTCTGAGTTCCAGGTCAGCCAGAGTGACACATTGAGCCAGAGG
CTCAATAATGATGAAGAGACAAAGGTCCAGAGGCGCAGAGACTGGGGCAT
GATCAGAGGCAGGACAGAGATGTGGACAGGCAGCCTGGCTTATCTCAGCT
GCCCACTTGCAGGTGAACCAGACCTTCGAGGAGCTGGCTCTGTTGAGGGA
CCTACACGAACTCTGGGGGGTGCTGGGACCCCAGATTTTCAACTTCATGA
ATGACAGTACCAACGTGGCCATGCTTCAGGTGGTTCAGGATGAAAGTGGG
CCTCTTGCGGACTGCGGTACGCTGGTCACGACCGTATGACGTGCATCTCT
CGACCTTTGCCCCCCTCCTTCATAGGCTTTTGTCATGTGTTGCGCTTAAG
CTCCCTTGCCTCCTATCTCCCTAGCTCCCCCATACTCTTGCCCTATCCCC
CCTCATTTCCCCGCATTTTTCCTATTTTCTGTTTCCCCTTTTACTCGTTT
TTTTTTTCCTTACTCTCCCCCATTTTTTTTTTTTCCCTTTTTTTTTCCCC
CTTTATTTTTCTTTACCCCCTCGTTTCTTTTCGCCTATCATTCTCTN

TCCTTTTTCTCCCCCCCCCCTTTCATTTNCCCCCTATTTCCCCTTCAATG
ATATGTGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXGCCTCAACTTCCCCAGTGCTGGGATT
AAAAACAGGTGCCACCAAACCCAATTTTGTATATGTCTTTGAGGATACAA
TTTATGTCCAGCGAGGGTGTGGTGGTTATGTAGTGGGGTCCCTGTACTAC
GAATCGAGGGCTTCTTTGGTGTTGGCGCGTCACGAAGGTTGGATGGTCCT
TTGGCCTCTATAAAATCCCCCCCACCGTGTAAGGGGGGTCTCACTTTTTT
TTTTCCCTCATTTTTTATTCTCACCAAACCTTCCTTTTGGGACCTTATTT
TTTTGCTTTTTCCGCCATATTCTCCCCCTCCCTTTTCTTTTTTTTCCTCC
TTTTTTTTTCTTTTTCCCCGGTACCCCATCTCATACGCTTTTTTCCATAT
CTATGTTTCCTTTTTTCCCCTTCATTCCCCTCTTCCTCTCTATCATATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_h02.b1 MSMg01no341_h02.b1 CHROMAT_FILE:
MSMg01no341_h02.b1 PHD_FILE: MSMg01no341_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:42 2005
         (391 letters)



>mm_chr10_79462983_79463773
          Length = 791

 Score =  681 bits (352), Expect = 0.0
 Identities = 374/384 (97%), Gaps = 6/384 (1%)
 Strand = Plus / Plus

                                                                       
Query: 11  ggaattccagccta---tcccatagggtcagatgttgtctcagaataatggaatggctcc 67
           ||||||||||||||   |   |||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ggaattccagcctaagtt---atagggtcagatgttgtctcagaataatggaatggctcc 267

                                                                       
Query: 68  gtgtgctggcacatgccttcagtaccagcattgggggcagaggcaggcagatctctgagt 127
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 268 gtgtgctggcacatgccttcagtaccagcattgggggcagaggcaagcagatctctgagt 327

                                                                       
Query: 128 tccaggtcagccagagtgacacattgagccagaggctcaataatgatgaagagacaaagg 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tccaggtcagccagagtgacacattgagccagaggctcaataatgatgaagagacaaagg 387

                                                                       
Query: 188 tccagaggcgcagagactggggcatgatcagaggcaggacagagatgtggacaggcagcc 247
           |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 388 tccagaggtgcagagactggggcatgaccagaggcaggacagagatgtggacaggcagcc 447

                                                                       
Query: 248 tggcttatctcagctgcccacttgcaggtgaaccagaccttcgaggagctggctctgttg 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tggcttatctcagctgcccacttgcaggtgaaccagaccttcgaggagctggctctgttg 507

                                                                       
Query: 308 agggacctacacgaactctggggggtgctgggaccccagattttcaacttcatgaatgac 367
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 508 agggacctacacgaactctggggggtgctgggaccccagatcttcaacttcatgaatgac 567

                                   
Query: 368 agtaccaacgtggccatgcttcag 391
           ||||||||||||||||||||||||
Sbjct: 568 agtaccaacgtggccatgcttcag 591


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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