BAC Information

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BAC

Clone NameMSMg01-342B22
Chromosome10 (Build37)
Map Location 47,264,239 - 47,350,956
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041632, LOC668252, LOC100042387
Downstream geneLOC100041663, LOC100042398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342B22.T7 (MSMg01no342_b22.b1)MSMg01-342B22.TJ (MSMg01no342_b22.g1)
ACCAG455748AG455749
length727732
length of high quality
(start - end)		507 (56 - 562)504 (63 - 566)
definitionCHROMAT_FILE: MSMg01no342_b22.b1 PHD_FILE: MSMg01no342_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:33 2005CHROMAT_FILE: MSMg01no342_b22.g1 PHD_FILE: MSMg01no342_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,350,551 - 47,350,956)(47,264,239 - 47,264,742)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAGCATG
TCCGCTTCAAGGATTTTCTAGGACGTTGGAATACTGGTGGAGGCTCACCT
ATGTTAAAATTCAATCTTTAAAGGCACTTATAATAAAACAATATTGAAAG
ACACCGTACACCATACTAATGCAGGGATAGGGTTTGAGTATATTGGCTAT
GAGAATGCCAAGGTTCCAGGAGGTTGAGTTTGCTTGAAACTCTTTGCCTC
TTGACTACCTCCAGGCTTTTCAACCCGGACTGGCAAACTTCACTGGAGTG
GGCGTATCATATGATAGAAATATTAAAATATCATAAAATAAACTTATATA
AATTATGACTTATATGATACTCCTTTAAGTACTTTATAGTATATTAAAGC
AAATAATTAAAAACACCATCCAATTAAGTTTCCTTATATGCAATATTATA
TTGCTTCTTATTTTGTAAATCTACATTTTATAATTATTCTACATTATAAC
TAGTTTCATAATTTTAGTCATTTACATAATCAAAATTTAATATAATCTTT
TCAATGCATGTTTAAGAATTAGTAATGGAATTTTTTAAACCTTAGATATT
TATAGCATTTTACATTGTATTTCATTAANATTATTTTTTTAAAGATTTCT
TTTGTTTTTCTTTTATTACAATGGTCTTTTTTTTCCATGATATATTCTGA
TAAAAATTCCCCTCCTTCACTAGTTAC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTATTTCATAACTGGAATAGACTTTCTGTTTTCATCCGA
CTATCTGGTTGGGTTTTCCTTATACTCATTGAGAAATCTACAGTTTTAAA
ATTTCCTTTCTTTGAATTCACTTATCATTTTTTAAAAATATTTGCCTGGA
ATTTGGTTATGTCACTTTCATCCAGGTCCATTATTCTAAGAATGATCGTT
TTAGAGGGATACAAGCTGTCTTGGTTTTGCCTGTTTCTCTTTATTTATTT
ATATATTTATTTACTTTTAATTAATGTACATCAAGATTTAGACTACTGAA
TAGATTTATTTTTGTTATTTATTTTTATACTTTTTCTTAGCAAAGAGTCT
TTGATAAACTGTTTACATGAAGCCTGAGATACCATTTTACTCTGTTAGAC
TGGTATATTGATTATAAGCTTTGTCTTGAGTCTCTCCCTGAATGTAGAAT
ACTGCTTTCGACAGCAGTTACTATTTGGAGCTAAATCGGCTAAAGAAGTT
AATTATGGCATTTTAGAGAATAAAGGAATATTTGTTAACAAGAGTATATG
TACTCATATTCATATGATGTACATAAAAAAATAAAGAATATAAAATTTGT
GATTCATATTGGGGGAATAAAAAAGAAAGAAAGCTGTCATACTTGTAAGT
GGCATAGCCAGGAGTCCAAAAGTGAAGAAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_b22.b1 MSMg01no342_b22.b1 CHROMAT_FILE:
MSMg01no342_b22.b1 PHD_FILE: MSMg01no342_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:33 2005
         (507 letters)



>mm_chr10_47350050_47350956
          Length = 907

 Score =  746 bits (386), Expect = 0.0
 Identities = 401/406 (98%)
 Strand = Plus / Minus

                                                                       
Query: 102 tacaccatactaatgcagggatagggtttgagtatattggctatgagaatgccaaggttc 161
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 tacaccttactaatgcagggatagggtttgagtatattggctatgagaatgccaaggttc 848

                                                                       
Query: 162 caggaggttgagtttgcttgaaactctttgcctcttgactacctccaggcttttcaaccc 221
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 caggaggttgagtttgcttgaaactctttgcctcttgactacctccaggcttttcaaccc 788

                                                                       
Query: 222 ggactggcaaacttcactggagtgggcgtatcatatgatagaaatattaaaatatcataa 281
           ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 787 ggactggcaaatttcactggagtgggcgtagcatatgatagaaatattaaaatatcataa 728

                                                                       
Query: 282 aataaacttatataaattatgacttatatgatactcctttaagtactttatagtatatta 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 aataaacttatataaattatgacttatatgatactcctttaagtactttatagtatatta 668

                                                                       
Query: 342 aagcaaataattaaaaacaccatccaattaagtttccttatatgcaatattatattgctt 401
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aagcaaataatcaaaaacaccatccaattaagtttccttatatgcaatattatattgctt 608

                                                                       
Query: 402 cttattttgtaaatctacattttataattattctacattataactagtttcataatttta 461
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 607 cttattttgtaaatctacattttataattattctacataataactagtttcataatttta 548

                                                         
Query: 462 gtcatttacataatcaaaatttaatataatcttttcaatgcatgtt 507
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gtcatttacataatcaaaatttaatataatcttttcaatgcatgtt 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no342_b22.g1 MSMg01no342_b22.g1 CHROMAT_FILE:
MSMg01no342_b22.g1 PHD_FILE: MSMg01no342_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:33 2005
         (504 letters)



>mm_chr10_47264039_47264942
          Length = 904

 Score =  959 bits (496), Expect = 0.0
 Identities = 502/504 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatttcataactggaatagactttctgttttcatccgactatctggttgggttttcctta 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 tatttcataactggaatagactttctggtttcatccgactatctggttgggttttcctta 260

                                                                       
Query: 61  tactcattgagaaatctacagttttaaaatttcctttctttgaattcacttatcattttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactcattgagaaatctacagttttaaaatttcctttctttgaattcacttatcattttt 320

                                                                       
Query: 121 taaaaatatttgcctggaatttggttatgtcactttcatccaggtccattattctaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaaatatttgcctggaatttggttatgtcactttcatccaggtccattattctaagaa 380

                                                                       
Query: 181 tgatcgttttagagggatacaagctgtcttggttttgcctgtttctctttatttatttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatcgttttagagggatacaagctgtcttggttttgcctgtttctctttatttatttat 440

                                                                       
Query: 241 atatttatttacttttaattaatgtacatcaagatttagactactgaatagatttatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatttatttacttttaattaatgtacatcaagatttagactactgaatagatttatttt 500

                                                                       
Query: 301 tgttatttatttttatactttttcttagcaaagagtctttgataaactgtttacatgaag 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 tgttatttatttttatactttttcttagcaaagagtctttgataaactctttacatgaag 560

                                                                       
Query: 361 cctgagataccattttactctgttagactggtatattgattataagctttgtcttgagtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctgagataccattttactctgttagactggtatattgattataagctttgtcttgagtc 620

                                                                       
Query: 421 tctccctgaatgtagaatactgctttcgacagcagttactatttggagctaaatcggcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctccctgaatgtagaatactgctttcgacagcagttactatttggagctaaatcggcta 680

                                   
Query: 481 aagaagttaattatggcattttag 504
           ||||||||||||||||||||||||
Sbjct: 681 aagaagttaattatggcattttag 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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