BAC Information

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BAC

Clone NameMSMg01-342H22
Chromosome10 (Build37)
Map Location 14,005,599 - 14,005,969
singlet/doubletsinglet
Overlap genenone
Upstream genePhactr2, LOC100039475, Fuca2, Pex3, Deadc1, Aig1, EG666859, Hivep2
Downstream geneGpr126, LOC100039571, LOC100039409, Vta1, D230044M03Rik, EG666904, Nmbr, LOC666917
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342H22.T7 (MSMg01no342_h22.b1)MSMg01-342H22.TJ (MSMg01no342_h22.g1)
ACCAG456034AG456035
length728731
length of high quality
(start - end)
469 (34 - 502)371 (63 - 433)
definitionCHROMAT_FILE: MSMg01no342_h22.b1 PHD_FILE: MSMg01no342_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:02 2005CHROMAT_FILE: MSMg01no342_h22.g1 PHD_FILE: MSMg01no342_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAACTT
TGCAATACCGAATGGCTAAGAAGCACCTGAAAAAATGTTCAACATCCTTA
ATCATCAGGGAAATGCAAATCAAAACAACCCTGAAATTCCACCTCACACC
GGTCAGAATGGTTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAG
GATGTGGAGAAAGAGAAACACTCCTCCATTGTGGGTGGGATTGCAAGCTG
GTACAACCACTCTGGAAATTAGTCTGGCAATTCCTCATAAAATTGGACAT
AGTACTACCGTAAGATCCAGCAATACCTCTCCTGGGCATATACCCAGAAG
ATGTTTCAACTTGTAATAAGGACACATGCTCCACTATGTTCATAGCAGCC
TTATTTATAATAGTCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGA
GGAATGGATACAGAANATGTGGTTCGTTTACATAATGGAGTACTACTCAG
CTATTTAAAACAATGAATTAATGAAATTTCTAGGCAAATGAATGGACCTG
GAGGATTTCTCCTGAGTGAGGGAACCCAATCCTCCATCATAACACTGGAT
GCCCTCCTTGTTAGTGGGATTTACCCCCAAACTTTAATACCCCCCAATCC
TTTTGGAAAATGTGGAACTCAAAAAAAAAACAACGGGGGAAACTCCTCCT
TCCTGAAGGGGAACAAAAACCTTGTAAG
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGTCTGCCAGGTAACACAATAGAGTTATAACTTCTTGC
GTCTGGAAAGGCCCTTTGTTTAAACCATTAAGCTGAGGAAAGGGAACGCA
AGCCTCTCTGGTGTAAATGAGTTTCAGATGTTTTGTGTGGCATGGTAACA
ATGGAAAAGACGCAAACTGAAGTCAGACCACAGCTTTAATTCAGCCTGTT
TAAGCATATAAGGACAGTTTCCTTGGTGTACTGGCTGGCTTTATGTGTCA
ATTTGACACAGGTTGGGGTTATCATAGAGAAAGGAGCTTCAGTTGGGGAA
GTGCCTCCATGAGATCCAGCTGTGGGATATTTTCTCAATTAGTGATCAAG
AGGGCAAGGCCCCTTGTGGTGGGACCATCTCTNGGNCTGGTAGGNCCTGG
GGTTCTAAAAAAAAAAAGGGAGGGGCTGGGAAAAAAAAGCCCCCCCGTGG
GGGGAAAAAAAACACCCNNNATTCCNCCCTCCNTTTTNTTGNNTTCNNTT
TTGTCAGAATNTATACNNNCCCTCTATCTCCCGCTCNNCTTTATAGTAAA
ATATCCATACAACACATAATNTCTCACTTACTGTACCTTCNNTTTATCCA
TTATTTCACTTTCCCCTTNCTTTTCTTCCCTCCCGCCCCATTTTTATCCT
CGTTTCTCTTTTATTTCTCTTTCTCCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_h22.g1 MSMg01no342_h22.g1 CHROMAT_FILE:
MSMg01no342_h22.g1 PHD_FILE: MSMg01no342_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:02 2005
         (371 letters)



>mm_chr10_14005556_14006326
          Length = 771

 Score =  702 bits (363), Expect = 0.0
 Identities = 369/371 (99%), Gaps = 1/371 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtctgccaggtaacacaatagagttataacttcttgcgtctggaaaggccctttgttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tgtctgccaggtaacacaatagagttataacttcttgcgtctggaaaggccctttgttta 355

                                                                       
Query: 61  aaccattaagctgaggaaagggaacgcaagcctctctggtgtaaatgagtttcagatgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aaccattaagctgaggaaagggaacgcaagcctctctggtgtaaatgagtttcagatgtt 295

                                                                       
Query: 121 ttgtgtggcatggtaacaatggaaaagacgcaaactgaagtcagaccacagctttaattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ttgtgtggcatggtaacaatggaaaagacgcaaactgaagtcagaccacagctttaattc 235

                                                                       
Query: 181 agcctgtttaagcatataaggacagtttccttggtgtactggctggctttatgtgtcaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 234 agcctgtttaagcatataaggacagtttccttggtgtactggctggctttatgtgtcaac 175

                                                                       
Query: 241 ttgacacaggttggggttatcatagagaaaggagcttcagttggggaagtgcctccatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 ttgacacaggttggggttatcatagagaaaggagcttcagttggggaagtgcctccatga 115

                                                                       
Query: 301 gatccagctgtgggatattttctcaattagtgatcaagagggcaaggccccttgt-ggtg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 114 gatccagctgtgggatattttctcaattagtgatcaagagggcaaggccccttgtgggtg 55

                      
Query: 360 ggaccatctct 370
           |||||||||||
Sbjct: 54  ggaccatctct 44


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)