BAC Information

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BAC

Clone NameMSMg01-342N21
Chromosome10 (Build37)
Map Location 129,604,254 - 129,604,739
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825
Downstream geneOlfr826, Olfr827, Neurod4, 5830405N20Rik, EG625068, LOC100043719, EG623734, EG625109, EG625131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342N21.T7 (MSMg01no342_n21.b1)MSMg01-342N21.TJ (MSMg01no342_n21.g1)
ACCAG456316AG456317
length728730
length of high quality
(start - end)		503 (57 - 559)489 (67 - 555)
definitionCHROMAT_FILE: MSMg01no342_n21.b1 PHD_FILE: MSMg01no342_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:30 2005CHROMAT_FILE: MSMg01no342_n21.g1 PHD_FILE: MSMg01no342_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGGAATTCAAGAC
CTACAACTAAACATAGTAAAAGCAATATACAGCAAAGCAGTAGCCATCAT
CACACTAAATGGAGAGAAACTTGAAGCAGTCCCATTATAATCAGAGACTA
GACACCTATAGACTACCTATTCAATATAGGATTCAAAGTCCAGAGCAATT
AGATAACAAAAGAAGGTCAAAGGGATACAAATTCCAAAGGAATAAGTAAA
AATATCACTATTTACAGATATGGTAGTATACTTAAGTGACCCCAAAAATT
CCACCAGAGCACTCCTAAACCTGATAAACAACTTCAGCACAGTGGCTGGA
TATAAAATCAACTCAAACAAAAAAGTAGCCTTCCTCTACTCAAAGGATAA
ACAAGCTGAGAAAGAAATTAGGGAAATGAAACCCTTTGCAATAGTCACAA
GTAATATAAAATACTTTGGTGTTACTCTATCCAAGCAAATGGAAGATCTG
TATGACAAGATCTTCAAGTCTCTGAAGACAGAAATCAGAGAAGATCTCAG
AAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATTAATATAGTAA
AATGGGCATCTTGGGTGAAGGAATCTGCAAATTCATTGCTATCCCCATCA
AAATTCCGACTCAATTCTTCCTAGAGTTAGAAAGAGAAATTGGGAATCCT
TTGGAATAACAAAGGCCCCCGGAAAGGN

TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCATTCAACAAAAAGGTTCCCTGTTGTCAGTTCAA
TCTTGTCAATAGCAACTGGTAGTGAGGTATATAAAAATAGAGAAGAGTGT
ATGGCAATGCCTAGCAAAAGTCCTCTAGTTCATTGGTGAAATTTAATAAT
GACTACCTATATTTAATTGGGGGTTTACTTCTAATCTAGTTGCCTGAAAG
TTGTTTATCCAGTTAGCATGTTGTTATATATTAATTTAATGATTTCTCAT
TGGTTGTATATTTTAAATAATTTTAGAACTATTCTAGCATTGGCAAAAAT
TCACAATTTGTGTTTAAAAATTAAAGAACAATTTCAATAGTATAAATGTT
ACCACATATAAACCAGGAAAGTGAATAAGCAAAGTGAAGAGCATATTGGG
CTCAGGGAGTCTTAATATGTGCAGCTAATCAAAGCTCATCCGTATATAGA
GGTCATAAGTTGACATCTGAAGTCTTCTGTCACTCTAATCTCTTGAAACA
GGATAGACACTGTCTAACACAGGACATTGCCATCTCACATTTGTTTTCTT
GTCTGAATAAGATCAGATGGAATCTCTTGAAGTTTTCATTTCTCCAAGGG
AATTGGATTAATTTTTATTGGCGGGAAAAAAGTTTCCTGACCTAAGCATG
GGAGAAAAAATTGTTTCCTTTCCTCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_n21.g1 MSMg01no342_n21.g1 CHROMAT_FILE:
MSMg01no342_n21.g1 PHD_FILE: MSMg01no342_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:30 2005
         (489 letters)



>mm_chr10_129604054_129604939
          Length = 886

 Score =  859 bits (444), Expect = 0.0
 Identities = 477/490 (97%), Gaps = 5/490 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattcaacaaaaaggttccctgttgtcagttcaatcttgtcaatagcaactggtagtgag 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattcaccaaaaaggttccctgttgtcagttcaatcttgtcaatagcaactggtagtgag 260

                                                                       
Query: 61  gtatataaaaatagagaagagtgtatggcaatgcctagcaaaagtcctctagttcattgg 120
            ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 ttatataaaaatagagaagaatgtatggcaatgcctagcaaaagccctctagttcattgg 320

                                                                       
Query: 121 tgaaatttaataatgactacctatatttaattgggggtttacttctaa-tctagttgcct 179
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 tgaaatttaataatgactacctatatttaattgggggtttacttctaagtctagttgcct 380

                                                                       
Query: 180 gaaagttgtttatccagttagcatgttgttatatattaatttaatgatttctcattggtt 239
           |||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 381 gaaagttgcttatccagttagcatgctgttatatattaatttaattatttctcattggtt 440

                                                                       
Query: 240 gtatattttaaataattttagaactattctagcattggcaaaaattcacaatttgtgttt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtatattttaaataattttagaactattctagcattggcaaaaattcacaatttgtgttt 500

                                                                       
Query: 300 aaaaattaaagaacaatttcaatagtataaatgttaccacatataaaccaggaaagtgaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaattaaagaacaatttcaatagtataaatgttaccacatataaaccaggaaagtgaa 560

                                                                       
Query: 360 taagcaaagtgaagagcatattgggctcagggagtcttaatatgtgcagctaatcaaagc 419
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taagcaaaatgaagagcatattgggctcagggagtcttaatatgtgcagctaatcaaagc 620

                                                                       
Query: 420 tcatccgtatatagaggtcataagttgacatctgaagtcttctgtcactctaatctcttg 479
           ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||
Sbjct: 621 tcatccgtatatagaggtcataagttgacatctgaagtcttc----actctaatctcttg 676

                     
Query: 480 aaacaggata 489
           ||||||||||
Sbjct: 677 aaacaggata 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 886
Length adjustment: 10
Effective length of query: 479
Effective length of database: 876
Effective search space:   419604
Effective search space used:   419604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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