BAC Information

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BAC

Clone NameMSMg01-342O09
Chromosome10 (Build37)
Map Location 5,319,347 - 5,319,903
singlet/doubletsinglet
Overlap geneSyne1
Upstream geneRgs17, Mtrf1l, Fbxo5, LOC666395, Vip, Myct1
Downstream geneEsr1, LOC100041310, Gm221, 1700052N19Rik, Rmnd1, Zbtb2, Akap12, Mthfd1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342O09.T7 (MSMg01no342_o09.b1)MSMg01-342O09.TJ (MSMg01no342_o09.g1)
ACCAG456340AG456341
length719768
length of high quality
(start - end)
557 (62 - 618)286 (64 - 349)
definitionCHROMAT_FILE: MSMg01no342_o09.b1 PHD_FILE: MSMg01no342_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:32 2005CHROMAT_FILE: MSMg01no342_o09.g1 PHD_FILE: MSMg01no342_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCGCTAAACGACTCACTAATCAGTGAGGAGGCGCGGAATTCAGCANGTT
CTAAGAATATTACTCAGCACACCCCAGTATAGCCATACAGAGAACAACTG
TTAGGTGCTGGCATTTATCTAGTACTTAATGTGTTTTGAGCACCATGCTA
AGAATTGTGTGTGTTACCTCAGTTAACATCCCTGTGATATGGCTGGCTAG
ATCCCTCAACTTACAGACAAGAACAAGAGATTATATATATGAACACAGGT
CTCACAAGACTCTGAACCCTACTATACTGAAAAGACACCTCTCTCCCACT
GTTTTGTTCATAGTAGGATTAATCAAGCAATGTATGCATAGGACCAGGTG
AACTTTCCATTTGGAAGGAGGGAATAACAGAGCCCTCAGTTGCTTCTTGC
AACTTGCCTTCTCAGCACACAGCTAGGAGCTACTGAATGTCAAAGACTAT
AGATGGACAGCTAGAAATTTCTGCATATGGAATTTATGTATCCTGTCTAA
CAAGTGTCAAAACAAACTGAAAATATCCCCCCCAGCTTTGTAAGATGTAC
ACATGTAATTATCTCATTATATCTTCCTTGACCCTGTGGGATCTGCAAAC
TGAGTTACCTACTATATGCAGATCCCCAGGCCTCATGGTTCTCTTTGTTA
TATGCACTTTCTTTTGTGTCATTTGTTTTTAGACCCTGGGCCATCCCTTT
ATTTCCTCCTTCCTCCATA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXATCCCCCATCTCTGGCTCCTACAAAGTTTCTCACTCT
ATCTTCCATGTAAACCACTGAGCCTTGCACAAGTCCAATTTACGGATGAA
AGCTTCGCAGTCTCCTGTTCTGCATGGTGACCAGGGTTAGTTGTTTTCTG
TGGCAAAAAGAAGTCTCTCTAGTGAGGGGTGATAGATTCACTGATCTTTG
CATGTAACAATAAGGCATCAGGAGCCATTTTAGTACTATGTCCATGTAGC
AGAATGATTATATTAGATGACCCCTAGGGCCAATGACTTGCTTAGCCACA
GGTGCTTAGCCCTGTTCACATCTCACAAAGCATGCCTAATTATTATGCTT
TTCTGTCTCCCTTGTTATCCCCTTTTGTTACAGCCTCCCTATTGAGGTTT
CTAATGTTAGGCCACCAACTACGATCTTTTTCCTTCTTAATTCTAACATT
ACTTTTCCTCCCCGCAATTTTTTCGACAACACACCTATTTTTTTATCTTT
TTTTTTTTTCTCCACTCTCATTTTCTCTTTAATTATTAATTTTTCTCTCT
TCAACACTCTTTCTTCCCCCCTTTTTTTTCCCCTATTTCTTTTTCTCCCC
CTTCCCTTTTTTCTATCTTTTTCCGCCTTTCTCTTTTTTCTCCTTCTTTT
TCATCTTTTTTTTTTCCTATTCTCTATTTTATTATTTCTCCCCCCCCCCT
TCTTTTTTTTTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_o09.b1 MSMg01no342_o09.b1 CHROMAT_FILE:
MSMg01no342_o09.b1 PHD_FILE: MSMg01no342_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:32 2005
         (557 letters)



>mm_chr10_5319147_5320103
          Length = 957

 Score = 1023 bits (529), Expect = 0.0
 Identities = 550/557 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcagcacaccccagtatagccatacagagaacaactgttaggtgctggcatttatcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcagcacaccccagtatagccatacagagaacaactgttaggtgctggcatttatcta 260

                                                                       
Query: 61  gtacttaatgtgttttgagcaccatgctaagaattgtgtgtgttacctcagttaacatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtacttaatgtgttttgagcaccatgctaagaattgtgtgtgttacctcagttaacatcc 320

                                                                       
Query: 121 ctgtgatatggctggctagatccctcaacttacagacaagaacaagagattatatatatg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 321 ctgtgatatggctggctagatccctcaacttacagacaagaacaagagattagaaatatg 380

                                                                       
Query: 181 aacacaggtctcacaagactctgaaccctactatactgaaaagacacctctctcccactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacacaggtctcacaagactctgaaccctactatactgaaaagacacctctctcccactg 440

                                                                       
Query: 241 ttttgttcatagtaggattaatcaagcaatgtatgcataggaccaggtgaactttccatt 300
              ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggatgtccatagtaggattaatcaagcaatgtatgcataggaccaggtgaactttccatt 500

                                                                       
Query: 301 tggaaggagggaataacagagccctcagttgcttcttgcaacttgccttctcagcacaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggaaggagggaataacagagccctcagttgcttcttgcaacttgccttctcagcacaca 560

                                                                       
Query: 361 gctaggagctactgaatgtcaaagactatagatggacagctagaaatttctgcatatgga 420
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctaggagctactgaatgtcaaacactatagatggacagctagaaatttctgcatatgga 620

                                                                       
Query: 421 atttatgtatcctgtctaacaagtgtcaaaacaaactgaaaatatcccccccagctttgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttatgtatcctgtctaacaagtgtcaaaacaaactgaaaatatcccccccagctttgt 680

                                                                       
Query: 481 aagatgtacacatgtaattatctcattatatcttccttgaccctgtgggatctgcaaact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagatgtacacatgtaattatctcattatatcttccttgaccctgtgggatctgcaaact 740

                            
Query: 541 gagttacctactatatg 557
           |||||||||||||||||
Sbjct: 741 gagttacctactatatg 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)