BAC Information

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BAC

Clone NameMSMg01-342P06
Chromosome10 (Build37)
Map Location 91,172,867 - 91,173,012
singlet/doubletsinglet
Overlap genenone
Upstream geneAnks1b, Apaf1, 1200009F10Rik, Slc25a3, Tmpo, LOC100041769
Downstream geneLOC100041799, LOC667203, LOC216229, LOC100041814, Nedd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342P06.T7 (MSMg01no342_p06.b1)MSMg01-342P06.TJ (MSMg01no342_p06.g1)
ACCAG456381AG456382
length804588
length of high quality
(start - end)
151 (63 - 213)---
definitionCHROMAT_FILE: MSMg01no342_p06.b1 PHD_FILE: MSMg01no342_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:37 2005CHROMAT_FILE: MSMg01no342_p06.g1 PHD_FILE: MSMg01no342_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGGT
TCCACCATAACATAAAAATATTTAGCACCTTTTCAACATGAAGAAAGACA
CGCCTTAAGGCTAAATGACTTGGTCAAAATCATAGAGTTGATACATGGCA
ATTTAGACCCAAAAGCCAGATGTTTTTATGTCAACTCTCTTTATTCCAGC
TATATACTTCAAGGATTGGGCTTAAATCTAAGCCCTAGGTAATTCCCTTC
CTTCAAATATTTCCCTTTTCCCCCCTTCTTTTTTCCCTCCTTTTTTATTA
TGCCCCAAACCTACTCTACAACTCATCCAACATTATTTTTATTTTTTTAC
TCTCCTCCCCTTTTCCTTTTTCTTTTTCCCTCATCTCTTTTTTTTTTTTT
CCTTTCCCTCTATTCTCACGCCATTTCTCTCTCCCTCCTTTTTTTTTTTT
CTTTTTTATCATCCCCCCCCCTTTGCTTCCTTCTTTATTTCTACTTTTTC
CTATTTATTTTCACTTTAATACTTCCTTTTATTTTATTTTTTATCCTCCC
TTCTCCCTCCCCTCTTATAATTTTTTTACCCTTACTCCTTATCTTCCTCT
ACAACTCCTTTTCTTTTTTCTTCCCATTTCATACCCCCTTTTTCTTTTCC
CCTCCCTTCTCCCCCCCCCGCTTTCCTTTACCTTTTCTTCTTTTATCCCC
TTTCATTTTATTATTCACCCCCCCCTTATATTATTTTTCTTCCCCGTGTT
CTCATCTATATTCTTATACATCTCCACACTATTCACTCTTCCTTTCTTTA
TTTC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGAGGATGGTGCCATGTGATTATTA
GGGACAAATGATGTTCAAGTGGCTTTGAAAAATNTTTTGGGGGAAAACAC
AATAATGTTTTCACATAGTTCTTTCAATATAGTGCCCTTAAAGTGCCAGA
GTTTTTCATCTAAAGTGGTGGTGTAGTACAAGTTTCCCTTTTTTTTTTTT
TCTTGCACTCCGCCCTCTTTTGTTTGTGGGGTTTGGGGTTTTTTTTGGGG
GGGNCCGCCGGGGGGGNNNNNNNTTTTTTTCCTTAAAGTTAGGGGGTTTT
CCCTTGTTTTTTTTTCTTTCTTTTTCGCTTTTTTAAACATATTTTACGTG
TGTCGGTTATTTTTCCCCATTTTAAAAGGGTTTTCTTTCCCTTATTTTCC
AACCAACACTCGCCTTTCTTTTTTGTTGACCCACCCCCCCCCCCCAATTA
GGTTAGTTTTTCACCTTTTTTCTTTTTTTTTTTTTTTATCATCCCCCCCT
TTATTATATTTTTTTTGTTTTTTTCTTTTTTTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_p06.b1 MSMg01no342_p06.b1 CHROMAT_FILE:
MSMg01no342_p06.b1 PHD_FILE: MSMg01no342_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:37 2005
         (151 letters)



>mm_chr10_91172667_91173216
          Length = 550

 Score =  269 bits (139), Expect = 6e-77
 Identities = 145/147 (98%), Gaps = 1/147 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaaaatatttagcaccttttcaacatgaagaaagacacgccttaaggctaaatgacttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 taaaaatatttagcaccttttcaacatgaagaaagacacgccttaaggctaaatgacttg 287

                                                                       
Query: 61  gtcaaaatcatagagttgatacatggcaatttagacccaaaagccagatgtttttatgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gtcaaaatcatagagttgatacatggcaatttagacccaaaagccagatgtttttatgtc 227

                                      
Query: 121 aactctctttattccagctatatactt 147
           || ||| ||||||||||||||||||||
Sbjct: 226 aa-tctgtttattccagctatatactt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 550
Length adjustment: 8
Effective length of query: 143
Effective length of database: 542
Effective search space:    77506
Effective search space used:    77506
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)