BAC Information

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BAC

Clone NameMSMg01-343C21
Chromosome10 (Build37)
Map Location 95,864,567 - 95,865,107
singlet/doubletsinglet
Overlap genenone
Upstream geneSocs2, LOC100042004, D10Ertd322e, Ube2n, Nudt4, EG628119, Eea1, EG432491
Downstream geneLOC667380, Btg1, LOC628256, 4930556N09Rik, EG667407
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343C21.T7 (MSMg01no343_c21.b1)MSMg01-343C21.TJ (MSMg01no343_c21.g1)
ACCAG456552AG456553
length749787
length of high quality
(start - end)
552 (20 - 571)384 (64 - 447)
definitionCHROMAT_FILE: MSMg01no343_c21.b1 PHD_FILE: MSMg01no343_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:54 2005CHROMAT_FILE: MSMg01no343_c21.g1 PHD_FILE: MSMg01no343_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATACGACTCCTATATTCAGAGGATCCGCGGAATTCTTCCCAATTTATCT
GCCAGAAACAATCACTGTGGCATACTATGATTGCTCAATGACCACAGTGA
CATTGCTGATGGTCCTGGTATCTCTTCACTTGGGAATTACAGTGCCAATA
TATAAAATAATACAAAGTCCCAAAGAGGACCTAAGAAAATGGTAAACATT
TGGGCTCACTGTGTGTCTAGGGGGGAAAAGCTGTTTCTTTCTTCCTTTTT
GGAGTTTTAAATTATGTTCTAATTGAAATAGAATAATATGGCTCTCTCTC
CTACTGTTCCTCCTGCAGACCCTCCCAGCTGTCTTCCCAAGGACTCATCC
TTCCATGAAATCCCCTTCTCAAGTTTATAACTTCTTTTTCTTTGATTTTT
ATTGTTATTACACACACATACCTACATCTTACATGTATGTGTGCTTGCGC
ATACATATGTATACACACACACCTTGCTGAGTCAATGGATGTTATTTGTG
TGTGTATGGTTTATCATTTCAGGGCTGACTACACTGAATTGGATAACCAA
CCCCGGAGCTCATTCTGAGAAAAGCTGATCCTCCTTCTCCTAACAGTCAT
TAGTTCCCTGTAGTTCTATCTAAAGAGTGGTCCCAGGAGAAAATTTCCCT
CTTCTCTGGTAAAATGACTAACACAGGTGTTAATTGTTCCCGCCCCGAAT
GTGAAACACCTTCCGTGAAAAACTCTTTTTAAAAAAAACCTCGGTATTG
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAGAACTCTTCAGCTGGGGAACAGTGGTAATGAAGTGT
TCCCGTAAAACAGACTGTTGAGAAGGATTCAACTGCGTGAATTCAGAACT
CTTCAGCTGGGGAACGGTGGTAATGAAGTGTTCCCGTAAAACAGACTGTT
GAGAAGGATTCAACTGCGTGAATTCAGAACTCTTCAGCTGGGGAACAGGG
TACCCGTAAGTATAGCTTTACAAGGTACGTCTGGCCTTGAACTTTCTAAC
GAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAGCTTTACAAGG
TATGTTTGACCTTGAACTTTCTCTAGTGTTAGGAGCCTTTTTGTTCCTTT
TCACATGTTATCAAGCGGTTAAGGCAGGGCTGAAAATTCTGGATGAAATT
CAGGGCAATCTATCAGAAGTAAAGCGGGGAGAGAGAGTATGAGCAAAGAG
GAAATTTGGTACACAAAGTAAGTATACAGGGCTTTTTCCCGGGTCTTTGA
ACCCGAGGAAAAATTTTAGTTCTGGTTAAAAAAAACTGTGGGGGAATTTA
AAATGAGGTTACAGGTAAAACAAAAAAAATTAAACTTTTCTTTGGGAGGT
TCCCTTTAAAAAGAGCCTCTCTACCTTTCCCCGTTGGTTTTTGTGGGCCC
CTTTTTTTTTTTTTCTTACCCATAACAAAAGTTATTTCGTTTCCATATTC
CGTTTTCCCCTCATCCTGTTATCTTCTTTTTATTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_c21.b1 MSMg01no343_c21.b1 CHROMAT_FILE:
MSMg01no343_c21.b1 PHD_FILE: MSMg01no343_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:54 2005
         (552 letters)



>mm_chr10_95864561_95865512
          Length = 952

 Score =  992 bits (513), Expect = 0.0
 Identities = 534/541 (98%)
 Strand = Plus / Minus

                                                                       
Query: 12  gaattcttcccaatttatctgccagaaacaatcactgtggcatactatgattgctcaatg 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gaattcttcccaatttatctgccagaaacaatcactgtggcatactatgattgctcaatg 488

                                                                       
Query: 72  accacagtgacattgctgatggtcctggtatctcttcacttgggaattacagtgccaata 131
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 accacggtgacattgctgatggtcctggtatctcttcacttgggaattacagtgccaata 428

                                                                       
Query: 132 tataaaataatacaaagtcccaaagaggacctaagaaaatggtaaacatttgggctcact 191
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 427 tataaaataatacaaagtcccaaagaggagctaagaaaatggtaaacatttggactcact 368

                                                                       
Query: 192 gtgtgtctaggggggaaaagctgtttctttcttcctttttggagttttaaattatgttct 251
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 367 gtgtgtctagggggggaaagctgtttctttcttcctttttggagttttaaattattttct 308

                                                                       
Query: 252 aattgaaatagaataatatggctctctctcctactgttcctcctgcagaccctcccagct 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aattgaaatagaataatatggctctctctcctactgttcctcctgcagaccctcccagct 248

                                                                       
Query: 312 gtcttcccaaggactcatccttccatgaaatccccttctcaagtttataacttctttttc 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gtcttcccaaggactcatccttccatgaaatccccttctcaagtttataacttctttttc 188

                                                                       
Query: 372 tttgatttttattgttattacacacacatacctacatcttacatgtatgtgtgcttgcgc 431
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 187 tttgatttttattgttattacacatacatacctacatcttacatgtatgtgtgcttgcgc 128

                                                                       
Query: 432 atacatatgtatacacacacaccttgctgagtcaatggatgttatttgtgtgtgtatggt 491
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 acacatatgtatacacacacaccttgctgagtcaatggatgttatttgtgtgtgtatggt 68

                                                                       
Query: 492 ttatcatttcagggctgactacactgaattggataaccaaccccggagctcattctgaga 551
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  ttatcatttcagggctgactacactgaattggataaccaaccccggagctcattctgaga 8

            
Query: 552 a 552
           |
Sbjct: 7   a 7


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)