BAC Information

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BAC

Clone NameMSMg01-343H14
Chromosome10 (Build37)
Map Location 26,938,871 - 26,939,281
singlet/doubletsinglet
Overlap geneLama2
Upstream geneSamd3, L3mbtl3, LOC435208, LOC667572, LOC100040349, Arhgap18
Downstream geneLOC100040385, LOC100040961, LOC100040401, Ptprk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343H14.T7 (MSMg01no343_h14.b1)MSMg01-343H14.TJ (MSMg01no343_h14.g1)
ACCAG456775AG456776
length753745
length of high quality
(start - end)
495 (35 - 529)411 (68 - 478)
definitionCHROMAT_FILE: MSMg01no343_h14.b1 PHD_FILE: MSMg01no343_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:19 2005CHROMAT_FILE: MSMg01no343_h14.g1 PHD_FILE: MSMg01no343_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACCT
GATGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTT
AATCATCAGGGAAATGCAAATCAAAACAACTCTGAGATTCCACTTCACTC
CAGTCAGAATGGATCAAAAACTCAGGTGACAGCAGATGCTGGCGAGGATG
TGGAGAAAGGGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTAC
AACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAATATTGGACATAGTA
CTACCGGAGGATGCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGT
CCCAAACGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTAT
TTATAATAGCCAGAAGCTGGAAATAACCCAGATGCCCCTCAACAGAGGAA
TGGATACAGAAAATGTGGTACATTTACACAATGGAATACTACTCAGCTAT
TAAAAAAAATGAATTTATGAAATTCCTAGGCAAATGTATGGACCTGGAGG
GTATCATCCTGAGTGAAGTATCCCAATCCCAAATGAATTCGCACAATATT
GTACTCACTGATAAATGGATATTACTCCCCAAACTTACGGAAATCCAGAA
TATAAGAGATTATTCGCCCAATGCATGATTTTCATCTATAAACTAATACC
CATTTTGGGGACCCCTTTTTTCTTTTCTTCCAAACGGTTTACTCACATCT
CCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGATCCCACAATAGCTCCATAGCTGAGTTGCTG
CTGCTGCTTGTTTAGGAACAATATGATTTATTATAGGAAGGGAAAAACCA
AGGAAAATGAATGGTAGTTAAAGAAAACAAGGAGAATAGGAAAAAAAAAA
ACCAATGGAATAGGACCAATAGACCTCTGCTTCATTCTGTCCCATCATCC
CTATGGAATAGGACCGATGGTCCTCTGCTTATCTCATTCTGTTCCATCAT
TCCTTAATGAATTTTCTGTTATCATCTGAGACCTACATTCCCATGCCCCC
TCTTTTTAAATACTTCAAAAGAAGAACAGAAAAAGCAACAGAGCCATTTT
ATATGACATTATTAGAAACAAGGAGTTGTAGTATTCTATGGTCTAGGCCC
AAGAACTATATATTTACACATCTATCCACAGAACAATTAGAGACACNCCA
GAGTTAGAATCAAAGTCTTTTCACTCTGGTGGAGCTGAACGCTGGGAACT
GAAAAAATGATATGGCCGGTTTCAGAATGGGACAAGGGCACTCTTTTTTA
AGAATACTTCCGCCCGGGAGGAACCGGATTCCTCCTGGGGTGCCGGGGTT
GGTTTTCTGTTCCCCCCCGTCCATTCTCTCTTAGGTTGCTTGTTCTATAC
GTTCGGTTTTATATTCTTTTTTTTTCTCCTCTTCTCTTCTTTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_h14.g1 MSMg01no343_h14.g1 CHROMAT_FILE:
MSMg01no343_h14.g1 PHD_FILE: MSMg01no343_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:19 2005
         (411 letters)



>mm_chr10_26938671_26939481
          Length = 811

 Score =  787 bits (407), Expect = 0.0
 Identities = 410/411 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatcccacaatagctccatagctgagttgctgctgctgcttgtttaggaacaatatgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatcccacaatagctccatagctgagttgctgctgctgcttgtttaggaacaatatgat 260

                                                                       
Query: 61  ttattataggaagggaaaaaccaaggaaaatgaatggtagttaaagaaaacaaggagaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttattataggaagggaaaaaccaaggaaaatgaatggtagttaaagaaaacaaggagaat 320

                                                                       
Query: 121 aggaaaaaaaaaaaccaatggaataggaccaatagacctctgcttcattctgtcccatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaaaaaaaaaaaccaatggaataggaccaatagacctctgcttcattctgtcccatca 380

                                                                       
Query: 181 tccctatggaataggaccgatggtcctctgcttatctcattctgttccatcattccttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccctatggaataggaccgatggtcctctgcttatctcattctgttccatcattccttaa 440

                                                                       
Query: 241 tgaattttctgttatcatctgagacctacattcccatgccccctctttttaaatacttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaattttctgttatcatctgagacctacattcccatgccccctctttttaaatacttca 500

                                                                       
Query: 301 aaagaagaacagaaaaagcaacagagccattttatatgacattattagaaacaaggagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagaagaacagaaaaagcaacagagccattttatatgacattattagaaacaaggagtt 560

                                                              
Query: 361 gtagtattctatggtctaggcccaagaactatatatttacacatctatcca 411
           ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtattattctatggtctaggcccaagaactatatatttacacatctatcca 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)