BAC Information

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BAC

Clone NameMSMg01-343N22
Chromosome10 (Build37)
Map Location 15,664,430 - 15,664,908
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC637043, LOC100039492, LOC671439
Downstream geneLOC382457, LOC546472, LOC100039576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343N22.T7 (MSMg01no343_n22.b1)MSMg01-343N22.TJ (MSMg01no343_n22.g1)
ACCAG457072AG457073
length764790
length of high quality
(start - end)		483 (31 - 513)407 (62 - 468)
definitionCHROMAT_FILE: MSMg01no343_n22.b1 PHD_FILE: MSMg01no343_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:52 2005CHROMAT_FILE: MSMg01no343_n22.g1 PHD_FILE: MSMg01no343_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGCTAATACGACTCCTATAGTTCGAGGATCCGCGGAATTCAGTCCTTTT
CTCTCAGATAAAACTCAGACATTGTATTATTATTGGGCCAAGTATTTTCT
GTAGACAGGCTAGAGGCCCAGGGTGCTGCTTCATGGACATACTATGAAAC
TGATGTCTAATTATTTATCATAACATCCAATTATTAATGCTTCTCCCAAA
ACCTACATGGAAAACCAAAACTAAACAAGATGGAAAAAATAAAAGACTGA
GGAATTGCTAGTCCTTGATGGAACATCTATATCATATTCCTTTCTTCCAA
GGCTCTGGAATAATTTTAAAGGAGACATGAAAAAATGTAAGAGACAGGGG
TAGCAATAATTATTACAAAGAAAATGCCTTTCATCATAACAAGGTAGCTG
TGCAAATGAACTAACTCAAAGTAGTTATAGCAGCATGTATAAGATTTATG
CAATTTCAAGCCAGTCCAAACCCAGCATGGGGGAAGTAGGTGGGCATAAA
GTTCATCTACCTCTTTCTGAGGAGCTACTTGAAATTTGTAGTTTTGGGGG
AGTATATAACTACTTTCCTTAAACTATATTATTTATGAGTATCTTTTATT
TACTTTGCAGCCTTATTTAAAATTATATATTCTTTCTCTTTTTCACTTTT
TCACTCTTTATATATATATTCTCCTATACTCTTTATTCCCCATTTCTATT
CCTTTGTTATTCCTTTTTTCTCCACATCATTTTTTTTTCCCCTCACTTAT
TTCTCTATTTTTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGCAGAGCAGAGGAAGGAAGGATTATTGAGCCAGGGAGA
ATCAAGGACACCATGAGAAAATAATAGAATCAACTAACCTGAACTCATAG
CAGCTCATAGAGACCTCACCAACAATGAGGAATCTTGCATCATTGAACCT
AGGCCCTCTGAATGTATGTTACAGTTGTGTATATTTGTCTTCTTACAGGA
CTCTTAATAGTGGCTGTCTCTAACTCTTTTGCCTGGTTTAGGATCTTTTT
ACTCCTGGATTGCCTTGTCCAGCATTAATATAAAGGGAGATACTTGTATT
ATTGCAATGTGATATGCAATGTGTTTGGTTGATATCTAAGGGAACCTTGA
CCTTTTGGAAGAAAATGGAAGATAGGAGGGACTAGTAACTGGGAGAAAAG
GAGTGAGGGAGAACAGGGGACCAGATGTTATTGATAATAACCGACAAATT
ACAATGGTTTTATAATATATTTTTCAATGCATGTAACCAATGTCAAGTGT
TTTGTAAAACATTGTTTTTTCTGCGCTTTACTATCATTTCCCCCTCCTTA
TCTCTCCCTTCTTATTCCTCTCCTTACTGCCTTCTTCATGCTATTTTAAA
TTAACTCTCCTTCTTCATCCCCACTTATACTACCCCCATCCGCTTTATTC
TTTTTTTATCTTCCACTACCCTATATATTGTTGTGATTACCTTGTTTGAT
CTCCTTTTATATTCCTCTCCCCTTTCCTCTTCCTATTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_n22.b1 MSMg01no343_n22.b1 CHROMAT_FILE:
MSMg01no343_n22.b1 PHD_FILE: MSMg01no343_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:52 2005
         (483 letters)



>mm_chr10_15664226_15665108
          Length = 883

 Score =  882 bits (456), Expect = 0.0
 Identities = 474/480 (98%), Gaps = 2/480 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcagtccttttctc-tcagataaaactcagacattgtattattattgggccaagt 63
           ||||||||||| ||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcagtcgttttc-cataagataaaactcagacattgtattattattgggccaagt 263

                                                                       
Query: 64  attttctgtagacaggctagaggcccagggtgctgcttcatggacatactatgaaactga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 attttctgtagacaggctagaggcccagggtgctgcttcatggacatactatgaaactga 323

                                                                       
Query: 124 tgtctaattatttatcataacatccaattattaatgcttctcccaaaacctacatggaaa 183
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 324 tgtctaattatttatcataacatccaattattaatgcttcttccaaaacctacatggaaa 383

                                                                       
Query: 184 accaaaactaaacaagatggaaaaaataaaagactgaggaattgctagtccttgatggaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 accaaaactaaacaagatggaaaaaataaaagactgaggaattgctagtccttgatggaa 443

                                                                       
Query: 244 catctatatcatattcctttcttccaaggctctggaataattttaaaggagacatgaaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 catctatatcatattcctttcttccaaggctctggaataattttaaaggagacatgaaaa 503

                                                                       
Query: 304 aatgtaagagacaggggtagcaataattattacaaagaaaatgcctttcatcataacaag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aatgtaagagacaggggtagcaataattattacaaagaaaatgcctttcatcataacaag 563

                                                                       
Query: 364 gtagctgtgcaaatgaactaactcaaagtagttatagcagcatgtataagatttatgcaa 423
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 564 gtagctgtgcaaatgaactaactcaaagtagttatggcagcatgtataagatttatgcaa 623

                                                                       
Query: 424 tttcaagccagtccaaacccagcatgggggaagtaggtgggcataaagttcatctacctc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tttcaagccagtccaaacccagcatgggggaagtaggtgggcataaagttcatctacctc 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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