BAC Information

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BAC

Clone NameMSMg01-343O04
Chromosome10 (Build37)
Map Location 22,950,545 - 23,053,833
singlet/doubletdoublet
Overlap geneEya4
Upstream geneLOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1, Tcf21
Downstream geneRps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7, Moxd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343O04.T7 (MSMg01no343_o04.b1)MSMg01-343O04.TJ (MSMg01no343_o04.g1)
ACCAG457084AG457085
length806767
length of high quality
(start - end)
292 (69 - 360)329 (73 - 401)
definitionCHROMAT_FILE: MSMg01no343_o04.b1 PHD_FILE: MSMg01no343_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:53 2005CHROMAT_FILE: MSMg01no343_o04.g1 PHD_FILE: MSMg01no343_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,053,543 - 23,053,833)(22,950,545 - 22,950,873)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATGGGCGGAATTCTTCA
AGGATTTACATTATATTCAGTGAGTATAATAAGTTGGAAAAAGATTAGGA
CAAACAAACTTATTAACCACACACATAAAAATATTTTGGTAGATACAATT
GCTAATGTAAGAATTATTTCTCTTTAATTACATAAATTCCCATAGTTGAT
ATTTAGAGTTCTTAAACTAATTGGTAAGAAAATATGTATCAGTGTATGTC
ATACTATAGTTTTTATTTAACACTGTATTTCTCATGATATTTAGGATTGT
CTCTAACTGATATGTTTGATGAAAACTTAGGAGGAGTTATATGTTATTGT
TCTATGTAGACCCCGCTGTGTATCACATGCCTGTCATAGGTATTATATAT
ATATTTTTACGCCCCCCCTTTTTTTTATCGTTGTCTTGCGAATTTGTTCT
CTCATTACATTTCTATTATATCCTTTTTACCACCTCCTTTTTTTTTATTT
CCTCTCACTTTTTTTCTACTTTGATTAACTTGCGTTAATATTTTTATCTT
ATTTTACCTCATATTATCCTATTAATCACTTTCTTTTTTTTCTTTCGTAT
TTTTTCCCCCATCTACATTGTTCCCCTCCTTCCTTTTTCTTCACTCCCTT
ATTTTGTTTTCCTCTCCTTTCTTAATTTCATCTACCTTTCTTATTGTTTT
TTTTACTATACTTCCTATTTTGTTTTCTCTATTTCTCATCCTTTTTCCGA
TGTATTTTTAATTTTTTCTATCCCTTCACTATTCGGCTTTATTTCTTCCC
TCTTCG
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXGCTCAGCAGGGTGGCCAGCAGAGATACA
CAGCCATGGATTTACTACTTAGAATTCACATCATGGGTGGAGTGAACTAA
ACCATTCCATGCATAGATACACACTGGACCTCAAAAATCTGAGTATTGAC
AAAAGAAAGTAAAAACATCACTGTATCATTTGAGTTGGGAAGTGAGATGA
GATCTTGGATATATTAGATCTGATAAAACATTTCCCCACATTTCTTCTTT
TATCACGTAGCCACTAGGAAATTTAAAATATGGTTGCGTCAGTTTTCAGC
TGAGTAGCCTTGGCCTAGAGTAGCAAGAGCCTGACTTTGGGGATCATGTG
ACCGATGACAACCCCTCCCACGAGGAGCATGCTAGTGATAAACGATGAAA
TCAATGCCAGAAGATCCAAGAGCACAGAATAAAACCCAGGAGAATAACTG
GGCATCGAAAGCTGGTAATATTATTTAGCGAGACAACCATCATTTATAAA
CTCACTTTTCCATTTAAAAAACTCTTCATTGTTCATGATTGTTAATTGGC
CCTGACCCTGACTACCCTATCTTACATTTTCGAATTATTTATCACCATTG
ATGCGATATTTAGGTCGCCCTTTTTTCTCATTTTTCTTATCGTTCTCTCA
ATCTTCTCTTCCATCGTTCATAATTCTTATCATTCACTCCTGTCTACCTT
ACTACCCTTCTTTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_o04.b1 MSMg01no343_o04.b1 CHROMAT_FILE:
MSMg01no343_o04.b1 PHD_FILE: MSMg01no343_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:53 2005
         (292 letters)



>mm_chr10_23053343_23054033
          Length = 691

 Score =  534 bits (276), Expect = e-156
 Identities = 288/292 (98%), Gaps = 1/292 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgagtataataagttggaaaaagattaggacaaacaaacttattaaccacacacataa 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 agtgagtataataa-ttggaaaaagattaggacaaacaaacttattaaccacacacataa 433

                                                                       
Query: 61  aaatattttggtagatacaattgctaatgtaagaattatttctctttaattacataaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aaatattttggtagatacaattgctaatgtaagaattatttctctttaattacataaatt 373

                                                                       
Query: 121 cccatagttgatatttagagttcttaaactaattggtaagaaaatatgtatcagtgtatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cccatagttgatatttagagttcttaaactaattggtaagaaaatatgtatcagtgtatg 313

                                                                       
Query: 181 tcatactatagtttttatttaacactgtatttctcatgatatttaggattgtctctaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tcatactatagtttttatttaacactgtatttctcatgatatttaggattgtctctaact 253

                                                               
Query: 241 gatatgtttgatgaaaacttaggaggagttatatgttattgttctatgtaga 292
           ||||||  ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gatatggatgaagaaaacttaggaggagttatatgttattgttctatgtaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 691
Length adjustment: 9
Effective length of query: 283
Effective length of database: 682
Effective search space:   193006
Effective search space used:   193006
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no343_o04.g1 MSMg01no343_o04.g1 CHROMAT_FILE:
MSMg01no343_o04.g1 PHD_FILE: MSMg01no343_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:53 2005
         (329 letters)



>mm_chr10_22950345_22951073
          Length = 729

 Score =  621 bits (321), Expect = 0.0
 Identities = 327/329 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctcagcagggtggccagcagagatacacagccatggatttactacttagaattcacatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctcagcagggtggccagcagagatacacagccatggatttactacttagaattcacatc 260

                                                                       
Query: 61  atgggtggagtgaactaaaccattccatgcatagatacacactggacctcaaaaatctga 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 atgggtggagtgaactaaaccattccatgcataaatacacactggacctcaaaaatctga 320

                                                                       
Query: 121 gtattgacaaaagaaagtaaaaacatcactgtatcatttgagttgggaagtgagatgaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtattgacaaaagaaagtaaaaacatcactgtatcatttgagttgggaagtgagatgaga 380

                                                                       
Query: 181 tcttggatatattagatctgataaaacatttccccacatttcttcttttatcacgtagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttggatatattagatctgataaaacatttccccacatttcttcttttatcacgtagcc 440

                                                                       
Query: 241 actaggaaatttaaaatatggttgcgtcagttttcagctgagtagccttggcctagagta 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 actaggaaatttaaaatatggttgcgtcagttttcagctgagtagccttggcctagagca 500

                                        
Query: 301 gcaagagcctgactttggggatcatgtga 329
           |||||||||||||||||||||||||||||
Sbjct: 501 gcaagagcctgactttggggatcatgtga 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)