Query= MSMg01no343_o04.b1 MSMg01no343_o04.b1 CHROMAT_FILE:
MSMg01no343_o04.b1 PHD_FILE: MSMg01no343_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:53 2005
(292 letters)
>mm_chr10_23053343_23054033
Length = 691
Score = 534 bits (276), Expect = e-156
Identities = 288/292 (98%), Gaps = 1/292 (0%)
Strand = Plus / Minus
Query: 1 agtgagtataataagttggaaaaagattaggacaaacaaacttattaaccacacacataa 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 agtgagtataataa-ttggaaaaagattaggacaaacaaacttattaaccacacacataa 433
Query: 61 aaatattttggtagatacaattgctaatgtaagaattatttctctttaattacataaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aaatattttggtagatacaattgctaatgtaagaattatttctctttaattacataaatt 373
Query: 121 cccatagttgatatttagagttcttaaactaattggtaagaaaatatgtatcagtgtatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cccatagttgatatttagagttcttaaactaattggtaagaaaatatgtatcagtgtatg 313
Query: 181 tcatactatagtttttatttaacactgtatttctcatgatatttaggattgtctctaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tcatactatagtttttatttaacactgtatttctcatgatatttaggattgtctctaact 253
Query: 241 gatatgtttgatgaaaacttaggaggagttatatgttattgttctatgtaga 292
|||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gatatggatgaagaaaacttaggaggagttatatgttattgttctatgtaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 691
Length adjustment: 9
Effective length of query: 283
Effective length of database: 682
Effective search space: 193006
Effective search space used: 193006
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no343_o04.g1 MSMg01no343_o04.g1 CHROMAT_FILE:
MSMg01no343_o04.g1 PHD_FILE: MSMg01no343_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:53 2005
(329 letters)
>mm_chr10_22950345_22951073
Length = 729
Score = 621 bits (321), Expect = 0.0
Identities = 327/329 (99%)
Strand = Plus / Plus
Query: 1 gctcagcagggtggccagcagagatacacagccatggatttactacttagaattcacatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctcagcagggtggccagcagagatacacagccatggatttactacttagaattcacatc 260
Query: 61 atgggtggagtgaactaaaccattccatgcatagatacacactggacctcaaaaatctga 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 atgggtggagtgaactaaaccattccatgcataaatacacactggacctcaaaaatctga 320
Query: 121 gtattgacaaaagaaagtaaaaacatcactgtatcatttgagttgggaagtgagatgaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtattgacaaaagaaagtaaaaacatcactgtatcatttgagttgggaagtgagatgaga 380
Query: 181 tcttggatatattagatctgataaaacatttccccacatttcttcttttatcacgtagcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttggatatattagatctgataaaacatttccccacatttcttcttttatcacgtagcc 440
Query: 241 actaggaaatttaaaatatggttgcgtcagttttcagctgagtagccttggcctagagta 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 actaggaaatttaaaatatggttgcgtcagttttcagctgagtagccttggcctagagca 500
Query: 301 gcaagagcctgactttggggatcatgtga 329
|||||||||||||||||||||||||||||
Sbjct: 501 gcaagagcctgactttggggatcatgtga 529
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space: 230400
Effective search space used: 230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|