BAC Information

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BAC

Clone NameMSMg01-343O15
Chromosome10 (Build37)
Map Location 81,586,698 - 81,586,944
singlet/doubletsinglet
Overlap genenone
Upstream geneMap2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063
Downstream geneAU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik, Txnrd1, Eid3, EG216185, Chst11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343O15.T7 (MSMg01no343_o15.b1)MSMg01-343O15.TJ (MSMg01no343_o15.g1)
ACCAG457104AG457105
length765773
length of high quality
(start - end)
247 (55 - 301)344 (63 - 406)
definitionCHROMAT_FILE: MSMg01no343_o15.b1 PHD_FILE: MSMg01no343_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:55 2005CHROMAT_FILE: MSMg01no343_o15.g1 PHD_FILE: MSMg01no343_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TACGACTCACTATATGCGAGAGATGGCGCGGAATTCTCCTTGGTTTCCTG
ACTGTCTGACTTTAACCTGTCTGTGCTTGAACTTCATGTAGGCAAACTTC
TGGAATGTATATATAAAACTTCACATTCCAACAAGACAAGTAAGCTTTTA
GTGGGTGTGCATTAGAGAGTGTTTGGCTACCTCGAAAGATAACCTTCAAA
TAGTCCCTTTGAACATTTCCTTAATGCCAGGTAGTGGTGGTGAACACATT
TAATCCCAGCACAAGAGAGGCAGAGGCAGGAAGATCTCTATGAGTTCAAG
GTTTTTTTGTTCTACAGAGTGAGTTCTAGCACAGTCAGGTCTATATAGAA
TACCCCTGTCTCCAAACAAAACATATTTAATTGATCCTCTTCTCCAATTT
CCGCAATCTATCAACCTTGGTTACAATCTTCTCATTATATACTATTAGAA
TATGATTAACCTCGGATCTTATCCTGCCCTGTGATACATCTTTTCATTAA
ATCAGGCTGTCTAATTTAACAAAGATTTAGTCTCATTATTTCCCCACTCT
TATCTTATTTTCCCCTATCCCCTCACTTTTTCTCAACTCTTTGTATCATT
CTATTTTTTCCCCGTTTTCCTCGTCTCTGTTTCTTTTTTATCTTTTTTTT
ATTTTATTTCGTCAATTTCTACTCTCTCTTCTTTTTTTTTTTTCTAAACC
TATTCCTTTATCCTTTACCACTTTCCTCAACATCTTTCCTATTCCTTTTC
CTTCTTTTTATCATN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAGTGGGCCCAGAAATGAGAGATGTGATCCTCCTTTTCT
GTTTCCTTCTAAAAGCACTTGGAGACTTCATTTGAAATTCTGTGATCTGG
AATAAATGTGTGGAGCACCCAGAATTATATAAATATATTCTCAGTGGAAT
GTACATTTACAGTGCAGCCAGTCTCACTATTTTTATTATGTATACGTATG
GGCTATTTTAGGATGCGGTGACCTATGAGGATGTGTATGTGAAATTCACT
CATGAAGAGTGGGCTTTGCTGGATCCATCCCAGAAGAGTCTCTACAAAGA
TGTGATGCTGGAGACATGCAGGAACCTCACTGCTATAGGTAAGAATATGA
GTTTCCCCCCACTTTCTAAACAAGGGGACAACGTTTCTTGGATATTGGCG
CACCTCTGTGATTTTCTTTTGCGATCAAATACTCATGTTGTTACTTTCCT
CTTTCCCAATCTCTTTTTTATCCGACGTTTATTTCCTACTACTCACAACT
CTACCTTTAATATCCTGTTATATTTGCCCGCTCTCATTTTTCTTTTTCTC
CGTTTTTTTCTTTTTCCTTCTCTCTTTCTATTCCAATTTTTCCGTTCACT
GGACTCATACCCTTTCTTTTCTCCTCATCTTTAAATATGGCATTCATCTT
CTTTATTTCCTCTCATCCCTACCGCCACCCTTTTCCTTTCTTCTTTCCCT
CAACTTTCTTTATCTTTTTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_o15.b1 MSMg01no343_o15.b1 CHROMAT_FILE:
MSMg01no343_o15.b1 PHD_FILE: MSMg01no343_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:55 2005
         (247 letters)



>mm_chr10_81586574_81587220
          Length = 647

 Score =  470 bits (243), Expect = e-137
 Identities = 246/247 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgactttaacctgtctgtgcttgaacttcatgtaggcaaacttctggaatgtatatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tctgactttaacctgtctgtgcttgaacttcatgtaggcaaacttctggaatgtatatat 312

                                                                       
Query: 61  aaaacttcacattccaacaagacaagtaagcttttagtgggtgtgcattagagagtgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aaaacttcacattccaacaagacaagtaagcttttagtgggtgtgcattagagagtgttt 252

                                                                       
Query: 121 ggctacctcgaaagataaccttcaaatagtccctttgaacatttccttaatgccaggtag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ggctacctcgaaagataaccttcaaatagtccctttgaacatttccttaatgccaggtag 192

                                                                       
Query: 181 tggtggtgaacacatttaatcccagcacaagagaggcagaggcaggaagatctctatgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 191 tggtggtgaacacatttaatcccagcacaagagaggcagaggcaggaagatctctatgaa 132

                  
Query: 241 ttcaagg 247
           |||||||
Sbjct: 131 ttcaagg 125


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)