BAC Information

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BAC

Clone NameMSMg01-344C05
Chromosome10 (Build37)
Map Location 65,691,013 - 65,691,203
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665206, LOC216036, 1700023F02Rik, 4930407I19Rik
Downstream geneReep3, Jmjd1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344C05.T7 (MSMg01no344_c05.b1)MSMg01-344C05.TJ (MSMg01no344_c05.g1)
ACCAG457275AG457276
length732727
length of high quality
(start - end)
250 (76 - 325)191 (73 - 263)
definitionCHROMAT_FILE: MSMg01no344_c05.b1 PHD_FILE: MSMg01no344_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:14 2005CHROMAT_FILE: MSMg01no344_c05.g1 PHD_FILE: MSMg01no344_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCACCTGTACAATACCGAATGGCAGAGAAGCACTTGAAAA
AATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTG
AGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTT
GGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTC
CTCAGAAAACTGGACATAGTACTATCTTATGATCCAGCAATACCTCTCCT
GGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCA
CTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCT
AGATGCCCCTCACCAGAGGAATGGATACTGAATATGTGGCACATCTACAC
AATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAG
CCAAATGTATGTACCTGTAGGCCATCATCCTGAGCGAGTTAACACTTTCA
CTAAGAAACTCTTCCATTTTGTATTCACTGATATTTTGTTATTTATCCTC
CTTTCTATGATATCTCTTTATATATGATTATAATTTACTACACTCTTGAT
AATCCCTAAAAAATTTATAATCTCACTATGCG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCTGATTTCCTTTTGAGTTCCTGTCAC
CACAGGAAGCATTCTGGGTTGGCATGTGAGCCTTGCTTGCCTGTCTTGGG
CATTTGGTCTATTTCGTTTTGTTGTGACTTCCCTTCTCTCAATCACCATG
TGGCCCCAATAAACAAATGTGACTCTTTAACTGTTTCTGACAGGCTTGGG
CATGATTAAATCAGCTTAGGAAAATGCCTAAAGATCCCGTATAGCCTTTC
TTTATGCAAAAGGTGCCGGGTTTCTAAGCTGAGCCAGAGAATGCTGTGAA
AGTAATGTCTAAAATGAGTGTGAGCTTTGTTGAGACTAGGAGGGGATGTA
ATCCTGCCAAATGGCCATAGTTATTAAACACTGTTAAGTATGTACACTGG
ATATTAAACAAATGATATCAAACAAGGTATGAAGCACTGGTGTTGTCCGT
GTGCCATAAGTCTTTCTACAGCGTTAAGTATTTTAATGCATTTTTAGAAT
CTCTCTCCCTCTCTCCCTCTCTCTCTCTCCCTCTCGTGTGCGTGTGAGCG
CGTGTTGTTTACGTTCTGATCCTTTCTATCATAATAGCACTCAACGAAAC
CCATTCTTTTTTTTTTCGTCTTATCGTGCTCCCCACTAATTTTTGTCTTT
TCCTATCTCCCCGTCCCTTCGATTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_c05.g1 MSMg01no344_c05.g1 CHROMAT_FILE:
MSMg01no344_c05.g1 PHD_FILE: MSMg01no344_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:14 2005
         (191 letters)



>mm_chr10_65690813_65691403
          Length = 591

 Score =  369 bits (191), Expect = e-107
 Identities = 191/191 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctgatttccttttgagttcctgtcaccacaggaagcattctgggttggcatgtgagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctgatttccttttgagttcctgtcaccacaggaagcattctgggttggcatgtgagcc 260

                                                                       
Query: 61  ttgcttgcctgtcttgggcatttggtctatttcgttttgttgtgacttcccttctctcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgcttgcctgtcttgggcatttggtctatttcgttttgttgtgacttcccttctctcaa 320

                                                                       
Query: 121 tcaccatgtggccccaataaacaaatgtgactctttaactgtttctgacaggcttgggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaccatgtggccccaataaacaaatgtgactctttaactgtttctgacaggcttgggca 380

                      
Query: 181 tgattaaatca 191
           |||||||||||
Sbjct: 381 tgattaaatca 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)