BAC Information

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BAC

Clone NameMSMg01-344C22
Chromosome10 (Build37)
Map Location 108,154,552 - 108,213,807
singlet/doubletdoublet
Overlap geneSyt1
Upstream genePtprq, EG628870, Ppp1r12a, Pawr, EG667814, EG368203
Downstream geneNav3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344C22.T7 (MSMg01no344_c22.b1)MSMg01-344C22.TJ (MSMg01no344_c22.g1)
ACCAG457308AG457309
length759753
length of high quality
(start - end)		470 (45 - 514)524 (74 - 597)
definitionCHROMAT_FILE: MSMg01no344_c22.b1 PHD_FILE: MSMg01no344_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:17 2005CHROMAT_FILE: MSMg01no344_c22.g1 PHD_FILE: MSMg01no344_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,154,552 - 108,155,017)(108,213,284 - 108,213,807)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTTGTTTTTCTTATTCATCTCTTATATCCTGCTTTTGGGCATTTC
TCATTTGCGTGTATTTTCTTATTTTTGAAGAATAGACAGAACCATACATC
TCATTTCTTTAGAATCAGGCACACAAAGATTAATAAGACTGTTGAGGAAG
ACTTTGGCAATGGGGTAATCAATACAAGAGTCATAGCTTTCTGTCATCAA
GACAGTCCACATTTTGATAAAGAAATAGTATATTTTATGTATATACAATA
TATGGCATAAATATATACATATACTTTATATATATTCTACATGTATATAG
TATATACTGTATGTTACAATATGTACTATATGTATATAGTATATACTATA
TATTATGTATAGTATATATGTACATATACATTTATTTTCATTATTAGATT
TTGGTAAGGGAATAGTATATATTAAACATAATAGTATATATTANATATAA
TAGTATATATCAAATAGTATATATTAAATATATTATCCCATATGTTATAT
GATATGAAGAGTATATAGTATATACGACCATATATATTTTTATTATTGAG
ATTGGNAAGGGATAATAAATATGGCCCTATTTTTTATTTGGTTTAAAAAA
AAAAGGGTTTTTGAAAGAGGCCCATGGGTTATTTTATTAACCAAAAATAA
CGCTGGAAAAAAAAAAAATAAAATCTTTGAAAAGGAACAAAGGTTTATTT
TTGGGTGGG

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTGGTCATTATTTCAATGTTTGTGTT
TTTCTACGTGGGCAAACAGTGGATACAGTCATCTAGAAGACCAATGCTCT
GATTGAATACAAGAGGGGGATAAATAAAAATGGAGGGGTATTAAAATCTT
TCATGTCTTTATTATACAATATGTGTTATAATACATGTTATGTGCAGGGA
TACACTATTAACATTGTTTGACTAGTGTGCTAGAATTGTCACTGAACTCC
CATGAATTTGCCACTTTAGAAGATTTACATATGCAGCCGCCAGTGATCAC
ATTGTAGGTATCTAGTTGCACACCTCAAAATGTTGCTTGCTGTTAGTAAT
TACTTCCAACTACTAATAGTACAGAGCCCTAGATGTTCTAAAATTACTGC
ATGAACAAGCATGGGGGTCACTAGAGAGAATACAGGACCGGTAATGCTGC
TACATATCTTGAATGCCCAATAGTAGCTAAGTGAAAACTACCAGTCACAG
TAACTCTATGCTTGTAGGTCAACCCTATGATGACGTGGTGAATTCAGACA
GATTCTAGATTATGATTTGAGACAGAACTCTGGCCACTTAAGTACTAGCC
CTGGNCATTCAGATTCTGGGAGCCTCTTACTGAGAAACACAGTTCACAAG
AAAGATGGTAAGATTCCTCTGACGGCATCTCTCTGGGACCTTTAAAAAAT
ACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_c22.b1 MSMg01no344_c22.b1 CHROMAT_FILE:
MSMg01no344_c22.b1 PHD_FILE: MSMg01no344_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:17 2005
         (470 letters)



>mm_chr10_108154348_108155217
          Length = 870

 Score =  888 bits (459), Expect = 0.0
 Identities = 464/466 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagttgtttttcttattcatctcttatatcctgcttttgggcatttctcatttgc 64
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagttgtttttcttattcttctcttatatcctgcttttgggcatttctcatttgc 264

                                                                       
Query: 65  gtgtattttcttatttttgaagaatagacagaaccatacatctcatttctttagaatcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgtattttcttatttttgaagaatagacagaaccatacatctcatttctttagaatcag 324

                                                                       
Query: 125 gcacacaaagattaataagactgttgaggaagactttggcaatggggtaatcaatacaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcacacaaagattaataagactgttgaggaagactttggcaatggggtaatcaatacaag 384

                                                                       
Query: 185 agtcatagctttctgtcatcaagacagtccacattttgataaagaaatagtatattttat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtcatagctttctgtcatcaagacagtccacattttgataaagaaatagtatattttat 444

                                                                       
Query: 245 gtatatacaatatatggcataaatatatacatatactttatatatattctacatgtatat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtatatacaatatatggcataaatatatacatatactttatatatattctacatgtatat 504

                                                                       
Query: 305 agtatatactgtatgttacaatatgtactatatgtatatagtatatactatatattatgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtatatactgtatgttacaatatgtactatatgtatatagtatatactatatattatgt 564

                                                                       
Query: 365 atagtatatatgtacatatacatttattttcattattagattttggtaagggaatagtat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atagtatatatgtacatatacatttattttcattattagattttggtaagggaatagtat 624

                                                         
Query: 425 atattaaacataatagtatatattanatataatagtatatatcaaa 470
           ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 625 atattaaacataatagtatatattaaatataatagtatatatcaaa 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no344_c22.g1 MSMg01no344_c22.g1 CHROMAT_FILE:
MSMg01no344_c22.g1 PHD_FILE: MSMg01no344_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:17 2005
         (524 letters)



>mm_chr10_108213084_108214007
          Length = 924

 Score =  998 bits (516), Expect = 0.0
 Identities = 522/524 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtggtcattatttcaatgtttgtgtttttctacgtgggcaaacagtggatacagtcatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 agtggtcattatttcaatgtttgtgtttttctacgtgggcaaacagtggatacagtcatc 665

                                                                       
Query: 61  tagaagaccaatgctctgattgaatacaagagggggataaataaaaatggaggggtatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tagaagaccaatgctctgattgaatacaagagggggataaataaaaatggaggggtatta 605

                                                                       
Query: 121 aaatctttcatgtctttattatacaatatgtgttataatacatgttatgtgcagggatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aaatctttcatgtctttattatacaatatgtgttataatacatgttatgtgcagggatac 545

                                                                       
Query: 181 actattaacattgtttgactagtgtgctagaattgtcactgaactcccatgaatttgcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 actattaacattgtttgactagtgtgctagaattgtcactgaactcccatgaatttgcca 485

                                                                       
Query: 241 ctttagaagatttacatatgcagccgccagtgatcacattgtaggtatctagttgcacac 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 484 ctttagaagatttacatatgcagccgccagtgatcatattgtaggtatctagttgcacac 425

                                                                       
Query: 301 ctcaaaatgttgcttgctgttagtaattacttccaactactaatagtacagagccctaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ctcaaaatgttgcttgctgttagtaattacttccaactactaatagtacagagccctaga 365

                                                                       
Query: 361 tgttctaaaattactgcatgaacaagcatgggggtcactagagagaatacaggaccggta 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tgttctaaagttactgcatgaacaagcatgggggtcactagagagaatacaggaccggta 305

                                                                       
Query: 421 atgctgctacatatcttgaatgcccaatagtagctaagtgaaaactaccagtcacagtaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 atgctgctacatatcttgaatgcccaatagtagctaagtgaaaactaccagtcacagtaa 245

                                                       
Query: 481 ctctatgcttgtaggtcaaccctatgatgacgtggtgaattcag 524
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ctctatgcttgtaggtcaaccctatgatgacgtggtgaattcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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