Query= MSMg01no344_i21.b1 MSMg01no344_i21.b1 CHROMAT_FILE:
MSMg01no344_i21.b1 PHD_FILE: MSMg01no344_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:46 2005
(489 letters)
>mm_chr10_113591434_113592325
Length = 892
Score = 847 bits (438), Expect = 0.0
Identities = 475/490 (96%), Gaps = 7/490 (1%)
Strand = Plus / Minus
Query: 5 gaattccttctggttcactcgttgtaattcatgctgtcattttttccttgtatattaggg 64
||||||||||||| ||| | |||||||||||||| |||||||||||||||||||||||||
Sbjct: 692 gaattccttctgggtca-t-gttgtaattcatgcggtcattttttccttgtatattaggg 635
Query: 65 ccttataatatctgcacttgaatttatcattcatattctttacttcttttggtgggttgt 124
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 634 ccttataatatctgcacttgaatttatcattcataatctttacttcttttggtggtttgt 575
Query: 125 tgagtcttctttaaacaaatagcattaggtctcacactgatgtatcagattaacattgaa 184
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 574 tgagtcttctttaaacaaatagcattatgtctcacactgatgtaacagattaacattgaa 515
Query: 185 attatacattttgctgttgaaaaaaattggctcttcctagggaaatggcagattagatca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 attatacattttgctgttgaaaaaaattggctcttcctagggaaatggcagattagatca 455
Query: 245 tttttgaagtaccatattctattgaaaagataacaaaagagttagagcatattgtaatta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tttttgaagtaccatattctattgaaaagataacaaaagagttagagcatattgtaatta 395
Query: 305 attttaaaccacaaaatagtagataagaaatttagtgggcatctaatggcattagatgtc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 attttaaaccacaaaatagtagataagaaatttagtgggcatctaatggcattagatgtc 335
Query: 365 tggacaaggagatggaaccttaaagccactatgtcctaatggcaaattcaaatgcatgta 424
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 334 tggacaaggagatggaaccttaaagccaccatgtcctaatggcaaattcaaatgcatgta 275
Query: 425 caaggaaaatttcatgtccttcaatgtcatgggaaacagag-----agtgagatcttggt 479
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 274 caagtaaaatttcatgtccttcaatgtcatgggaaacagagagtgaagtgagatcttggt 215
Query: 480 tttgccagtg 489
||||||||||
Sbjct: 214 tttgccagtg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 892
Length adjustment: 10
Effective length of query: 479
Effective length of database: 882
Effective search space: 422478
Effective search space used: 422478
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_i21.g1 MSMg01no344_i21.g1 CHROMAT_FILE:
MSMg01no344_i21.g1 PHD_FILE: MSMg01no344_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:47 2005
(519 letters)
>mm_chr10_113398503_113399421
Length = 919
Score = 870 bits (450), Expect = 0.0
Identities = 505/526 (96%), Gaps = 10/526 (1%)
Strand = Plus / Plus
Query: 2 ctttactatagaagttcatcttaatgtattatttaggtattaaataaatcttttcacatg 61
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 202 ctttactatagaagttcatcttaatgtattatttaggtattaaagaaatcttttcacatg 261
Query: 62 tacattcaacagaaaattagaaattttatcataaagttgtttactgttgagctagtcttt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 262 tacattcaacagaaaattagaaattttatcataaagttgtttactgttgagctagtc-tt 320
Query: 122 tttttttcttttttgttgtatattttctttatttaca----tttctttctttctttttat 177
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 tttttttcttttttattgtatattttctttatttacatttctttctttctttctttttat 380
Query: 178 tattatt-tttttttatta--ttttggtttggtgttttgagacaaggtttctctgtgttg 234
||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 tattattatttttttattattttttggtttggtattttgagacaaggtttctctgtgttg 440
Query: 235 ccctggctgtcctggaactcagtctgtagaccagggtggcctcaaactcagaaatcaacc 294
||||||||||||||||||||| |||||||||||||||| |||| |||||||| |||||||
Sbjct: 441 ccctggctgtcctggaactcactctgtagaccagggtgacctc-aactcagatatcaacc 499
Query: 295 ttcctctgcctcctgagtgctgagattaaaggtgtgtaccaccattgcctggcaagcttg 354
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 500 ttcctctgcctcccgagtgctgagattaaaggtgtgtaccaccattgcctggcaagctag 559
Query: 355 tctttatagttgtactggctgattttgtgcgtcaacttgacacaaactggagttaccaca 414
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 560 tctttatagttgtactggctgattttgtgtgtcaacttgacacaaactggagttaccaca 619
Query: 415 gaaaaaa-gatcctcccttggggaaatgactccatgagatccagctgtcaggcattttct 473
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 620 gaaaaaaagatcctcccttggggaaatgcctccatgagatccagctgtcaggcattttct 679
Query: 474 caattagtgattaagggtgggagagcccattgtaggcagtgccatc 519
||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 680 caattagtgattaagggtgggagagcccattgtaggcggtgccatc 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
