BAC Information

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BAC

Clone NameMSMg01-344M11
Chromosome10 (Build37)
Map Location 114,552,148 - 114,552,622
singlet/doubletsinglet
Overlap geneTph2
Upstream geneTrhde, 4930473D10Rik
Downstream geneTbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8, Ptprr, 4933416C03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344M11.T7 (MSMg01no344_m11.b1)MSMg01-344M11.TJ (MSMg01no344_m11.g1)
ACCAG457761AG457762
length7371,104
length of high quality
(start - end)
476 (69 - 544)---
definitionCHROMAT_FILE: MSMg01no344_m11.b1 PHD_FILE: MSMg01no344_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:04 2005CHROMAT_FILE: MSMg01no344_m11.g1 PHD_FILE: MSMg01no344_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCTTTCCGTGAATTCTTTCTTTCCGTGCCTATAGAATCTCAGT
TCCTGGAGTTGCACTTTGTCGGACTGTCCTTCTTCTTCCAGATCAACAAA
TTGAAGCGTGCTCAGGATACATGTATGAAAATCATCTTTACATCCATTTT
AAGTTATAATTCAGGGCCTGTGAGATGGTTCAGCCGGTAAAATACTCTTT
CCACCAAGCCTAAATACCTGAATTTGATCCCCAGATCCCACATGGTAGAA
GAGAGAACCAATTTCCATATTATTGTTTTCTGACCTTCACACTGTACTAA
GGCACACACATATACACAGAGACACACACTCACATGGAAACATGGGAGGA
CACACACATGTGTGCAGACATGTGTGTGAGCACGCTTGAACACATACATA
CAGAGAGACACATGCATGCACATGGACACATGGACAGACACACACATGCA
TGTGTGCAGGCACATGTTTGAGTACCCTCGAGTGCATGCGCTCACACACA
CACACTCACACTCAATCTAATATGTAACCAGATATACTTAAGTTGTCACT
TAAATCATTTTGCCTTTTTACAATATACATTAAGAGAATTTATTGTAGTA
ATCATCTTTAAAAAAAAACTCTGTTGTTCACTAAACTAAATTGCATTACT
GGGGACTAAACAGTATCTGTTAAGATTAAACTATGTG
TTTTGTTTATTTACTAGAGNAGACGGAATTGATATCAAAAACAGTGGGAG
GGNGANAGCTAANAGGATTTTCTCCAGACGAGAAAGTGCTTGCTGTTTTG
TAATACTTATTCATGATATCTGTATGTAGAGAGAGTTCTCATTTCTTGTT
TCGGTTGCTATTGTATTTTCTATACAGTTCATGTAATCTCCATAATTCTC
GATGTTACTCTCGTCTCTGTGTATTGTATCTTGGTATTTTTAATACTCGT
CTATGTTATGTCGTAATTCGTTGTGAATCTAGCGGTTGTCTTCTCGTTTA
ATTAGTATGCGCAACTGTGAGGGTATGCGTTTATTGTGTGTGCTACACGG
CACTCATTAACTCTCTTAGTCATCTCTTGTAGAGCTAATCGTATGATACT
TCTTGATGGAACATTTGTAGTGCTCATTCTTCTTTTTTCTTATCTACGAA
TGTAGCTTGCGTATCAATTATAGCTCTATTAGTCCTGTAATTTTACTCTA
ATTACAGCTCTCCTTATTCGTTAGAATAAAATACTACAAATTCCACGCTC
AAGATATATATCTTATGTTAAGGTTGTGTATTCATCCCGCCTCATATTAT
GTTATGTTTACCATGTCGACTTCTTATAGCTTATACAAGGTTCTATTATT
TGTACTTTCGCTCTGAATAGTTTTACTATCTAGTAGATATATGATAGATA
TAGCTATAAAGTTGCTCTTCTTATATTATCTATGATAACTCCTTATCTAC
TATTCTGTAGCGTTTCATGTTCGTCTATACGATTAACCTTACGTAATTTC
GCTTTCTATTGCGTAGTCTTATTATTCTATATCAGCTACATACAACACTA
ATATAATATTCGCTATATTATATTCGTTATGTACTTACATAAGTATATAA
TAATTCTGCATCCTATTTTTATGCCTCGTTCTTACAAATATTCGACGTAT
ATTAATAGAAACACTATACTATCCTCTAGATTCGTAATCATCTCATTATA
TACAATACTCATATTATTCGATAGTTATATCGTAGATCTAACGACAATAT
TATTTTTCATTTCATCATTAATACACTACATACGATTCACTTTTCGTTTT
ATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_m11.b1 MSMg01no344_m11.b1 CHROMAT_FILE:
MSMg01no344_m11.b1 PHD_FILE: MSMg01no344_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:04 2005
         (476 letters)



>mm_chr10_114551948_114552823
          Length = 876

 Score =  882 bits (456), Expect = 0.0
 Identities = 471/476 (98%), Gaps = 1/476 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctttctttccgtgcctatagaatctcagttcctggagttgcactttgtcggactgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctttctttccgtgcctatagaatctcagttcctggagttgcactttgtcggactgtc 260

                                                                       
Query: 61  cttcttcttccagatcaacaaattgaagcgtgctcaggatacatgtatgaaaatcatctt 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcttcttccagatcaacgaattgaagcgtgctcaggatacatgtatgaaaatcatctt 320

                                                                       
Query: 121 tacatccattttaagttataattcagggcctgtgagatggttcagccggtaaaatactct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacatccattttaagttataattcagggcctgtgagatggttcagccggtaaaatactct 380

                                                                       
Query: 181 ttccaccaagcctaaatacctgaatttgatccccagatcccacatggtagaagagagaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccaccaagcctaaatacctgaatttgatccccagatcccacatggtagaagagagaac 440

                                                                       
Query: 241 caatttccatattattgttttctgaccttcacactgtactaaggcacacacatatacaca 300
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caatttccataa-attgttttctgaccttcacactgtactaaggcacacacatatacaca 499

                                                                       
Query: 301 gagacacacactcacatggaaacatgggaggacacacacatgtgtgcagacatgtgtgtg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 500 gagacacacactcacatggaaacatgggaggacacacacatgtgtgcagacacgtgtgtg 559

                                                                       
Query: 361 agcacgcttgaacacatacatacagagagacacatgcatgcacatggacacatggacaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agcacgcttgaacacatacatacagagagacacatgcatgcacatggacacatggacaga 619

                                                                   
Query: 421 cacacacatgcatgtgtgcaggcacatgtttgagtaccctcgagtgcatgcgctca 476
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cacacacatgcatgtgtacaggcacatgtttgagtaccctcgagtgcatgcgctca 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)