BAC Information

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BAC

Clone NameMSMg01-345E02
Chromosome10 (Build37)
Map Location 21,553,268 - 21,553,815
singlet/doubletsinglet
Overlap geneLOC628133
Upstream geneLOC667202, Ahi1, Myb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906, 1700020N01Rik, EG432436, LOC100039936
Downstream geneSgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1, Tcf21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345E02.T7 (MSMg01no345_e02.b1)MSMg01-345E02.TJ (MSMg01no345_e02.g1)
ACCAG458121AG458122
length870735
length of high quality
(start - end)
---546 (85 - 630)
definitionCHROMAT_FILE: MSMg01no345_e02.b1 PHD_FILE: MSMg01no345_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:40 2005CHROMAT_FILE: MSMg01no345_e02.g1 PHD_FILE: MSMg01no345_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCACATTTAATTTTTTTCTAACTTTTAAATTTTATTTTTTTTCGTACG
AATTCCTACAACCCGATCCCACCGTTCAATATCGGTAATGTGAACTCTCG
CCGAAAACGACAAACTTACATAGTTCGCTTTAATTTTTAAATTCTCACCA
AAAATTTCACATTCAAACTTCTAACTATTACATTTGAATTTAAAAATACA
AATTCCATTCCCACTACACACTTTTTACCTTTCTTCATTACGCGCACGCG
TAATATAAACGACGTATCCGAACAACATTCTATAAACACGCGTTATCGAT
CGTTAAACGTCTACGCAATTCGTTCGTTCCGCAAAACGACTCATACCGTT
AAACTCACCACCTTCCCACGCCTTCACTTCTCCCTCCTCTCTTCCACTTC
CCATATTATCACCCTTTAAATTGCACTCCAACCCTTTCTACAATAAACAA
CAAACAACACCTTCCCCACCCACCCCACTCCACCCTTATCTCACTCAATT
CTGTCTTTTACTACCACCTTCTCTCTCACACATCTCTGAATTTTTTTTTC
CCATCACACAACTTCATCTCTTCACATTATCATCACTAAATATTTCCGCT
TCCCTTCCCATTTGACGAACCCATCATATGAAACCTACACCCAATGCCAC
ACTATAGATCCTCCCACCCCTAACCATACATCACCCCATCACACACAACA
ATCTTTCTTGTCGCAAAATGCAAAAAAAATTCTCCCTTCAAACATCCTCT
CAACCGTTGTTTCCCTTCAAATCCTTTCATTATTCCTTTTTTCACCCTCC
CCTCCCCCTTATTCTCCCTTTTCATCCACATACCCTTATCCCTCTACCCC
TCTTAACATCAATCTCCACA
CCAACCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAGCTTGCCATCAG
AGGACCCCCAGGATCATGGACTAGGTTATTTTACTTCTCCCAGCTCCCAG
TCCTGTCTTCTACGCCAAAGCAACCTGAAGGGGTTCACAAAGCGCTCATC
CCTTTTCTGGGGCCTCAACTTGCTTCCATTGCCTGCCCATTCACTCACTC
ACAATCCCTGCCCTCATGAACTGAAAGCAGGAAGCGCACCCACCTACCAC
ACTCACCCATCACACAGAGCCCACCCCAATCTCTCAAATCAGACAAGATC
TTATGTTCCCTACTAACCCCACAGTTTTTTTTTCTTCATATTCCCTGATT
GCCACTTTCTGCTTTGAATTAGTTGTCTGTATCTGTGGCTTCATCTCCCT
TGTCAGACTAGGAACCCTTGGGAATGTGAACAAGCCTCAGACATTTTTGT
ACTGGCCGCAGTACCTGGGCACAGTGCCTTCAATGAAGCAGTTACCCAAT
AAATGCCTGAGGTAGTTATCACCGTCTACTCTGTGGTCTTGACTGTTCTA
TTGAGAATGAATAAAAATAGTCATCGCAGGATGCTTCTTCGTATATGTGT
GCAAGTTTAATCATGAACAATGACAAGCTTGAAGAAAGTAAAACATTCTT
CTGCATGATGATATGTTCCTGGAATGGGTGCAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_e02.g1 MSMg01no345_e02.g1 CHROMAT_FILE:
MSMg01no345_e02.g1 PHD_FILE: MSMg01no345_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:40 2005
         (546 letters)



>mm_chr10_21553068_21554015
          Length = 948

 Score = 1015 bits (525), Expect = 0.0
 Identities = 542/549 (98%), Gaps = 4/549 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attagcttgccatcagaggacccccaggatcatggactaggttattttacttctcccagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attagcttgccatcagaggacccccaggatcatggactaggttattttacttctcccagc 260

                                                                       
Query: 61  tcccagtcctgtcttctacgccaaagcaacctgaaggggttcacaaagcgctcatccctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccagtcctgtcttctacgccaaagcaacctgaaggggttcacaaagcgctcatccctt 320

                                                                       
Query: 121 ttctggggcctcaacttgcttccattgcctgcccattcactcactcacaatccctgccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctggggcctcaacttgcttccattgcctgcccattcactcactcacaatccctgccct 380

                                                                       
Query: 181 catgaactgaaagcaggaagcgcacccacctaccacactcacccatcacacagagcccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgaactgaaagcaggaagcgcacccacctaccacactcacccatcacacagagcccac 440

                                                                       
Query: 241 cccaatctctcaaatcagacaagatcttatgttccctactaaccccacagttttttttt- 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 cccaatctctcaaatcagacaagatcttatgttccctactaaccccacagtttttttttt 500

                                                                       
Query: 300 --cttcatattccctgattgccactttctgctttgaattagttgtctgtatctgtggctt 357
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccttcatattccctgattgccactttctgctttgaattagttgtctgtatctgtggctt 560

                                                                       
Query: 358 catctcccttgtcagactaggaacccttgggaatgtgaacaagcctcagacatttttgta 417
           ||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catctccca-gtcagacaaggaacccttgggaatgtgaacaagcctcagacatttttgta 619

                                                                       
Query: 418 ctggccgcagtacctgggcacagtgccttcaatgaagcagttacccaataaatgcctgag 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctggccgcagtacctgggcacagtgccttcaatgaagcagttacccaataaatgcctgag 679

                                                                       
Query: 478 gtagttatcaccgtctactctgtggtcttgactgttctattgagaatgaataaaaatagt 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtagttatcaccgtctactctgtggtcttgactgttctattgagaatgaataaaaatagt 739

                    
Query: 538 catcgcagg 546
           ||| |||||
Sbjct: 740 catagcagg 748


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 948
Length adjustment: 10
Effective length of query: 536
Effective length of database: 938
Effective search space:   502768
Effective search space used:   502768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)