Query= MSMg01no346_a21.b1 MSMg01no346_a21.b1 CHROMAT_FILE:
MSMg01no346_a21.b1 PHD_FILE: MSMg01no346_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:38 2005
(562 letters)
>mm_chr10_11608191_11609152
Length = 962
Score = 1060 bits (548), Expect = 0.0
Identities = 556/559 (99%)
Strand = Plus / Minus
Query: 4 ggaattcaagaacaatggtagacagtgggctagagaattgtgcctgtttgccaggtatgg 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 572 ggaattcaagaacaatggtagacagtgggctagagaattgtgcctgtttgccagatatgg 513
Query: 64 gtgacacaatggtgtcatcagccaatcaaaggacttcactcaggtgaagtcactggagga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gtgacacaatggtgtcatcagccaatcaaaggacttcactcaggtgaagtcactggagga 453
Query: 124 acattccccaggtgatccacatcaaggaatgttgaggaagagaaatccaagttggattca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 acattccccaggtgatccacatcaaggaatgttgaggaagagaaatccaagttggattca 393
Query: 184 gagtgcatggtaaaagggccacaggaatttcacctccacattttacaaatgattggtagt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gagtgcatggtaaaagggccacaggaatttcacctccacattttacaaatgattggtagt 333
Query: 244 ttcttagaaccgcaggtcgaacggtttgagttcatcagagatttttgcaaagtgtgacta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ttcttagaaccgcaggtcgaacggtttgagttcatcagagatttttgcaaagtgtgacta 273
Query: 304 atgagccacatgagctcaaaaaaggtgttggtgaaagggtttgatatgtatagaagaaat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 atgagccacatgagctcaaaaaaggtgttggtgaaagggtttgatatgtatagaagaaat 213
Query: 364 taactgaagaaattaaattaattagcatgtccacctccttggacagttaccacttcttat 423
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 taactgaagaaattaaaataattagcatgtccacctccttggacagttaccacttcttat 153
Query: 424 gctggaaacgtttgaagaagaaagctcgaggatataacacagataaaatataatcactga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 gctggaaacgtttgaagaagaaagctcgaggatataacacagataaaatataatcactga 93
Query: 484 cgaaatagtagacagaactaaagaaaaaggaagcattgagttcaaagacnaacagtaagt 543
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 92 cgaaatagtagacagaactaaagaaaaaggaagcattgagttcaaagacaaacagtaagt 33
Query: 544 cttaaagctgattttgaat 562
|||||||||||||||||||
Sbjct: 32 cttaaagctgattttgaat 14
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_a21.g1 MSMg01no346_a21.g1 CHROMAT_FILE:
MSMg01no346_a21.g1 PHD_FILE: MSMg01no346_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:38 2005
(508 letters)
>mm_chr10_11593930_11594840
Length = 911
Score = 919 bits (475), Expect = 0.0
Identities = 501/511 (98%), Gaps = 3/511 (0%)
Strand = Plus / Plus
Query: 1 ttttcagcgaggaagaagaatgaaattatgctgtttctgaggaaatgagtggaagcagag 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttcagtgaggaagaagaatgaaattatgctgtttctgaggaaatgagtggaagcagag 260
Query: 61 gctatcatggtaagccaaagaaggcagctgcagaagcttttctctcatctgtggaaacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctatcatggtaagccaaagaaggcagctgcagaagcttttctctcatctgtggaaacaa 320
Query: 121 acgagcaatcaagtaaaacggaataactaacctggacatggacaacagaacatggaag-- 178
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 acgagcaatcaagcaaaacggaataactaacctggacatggacaacagaacatggagggg 380
Query: 179 -aggaggggagggggcgagggaatagtaaacatggcacaatcattgaaagcttagtacat 237
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 gaggaggggagggggcgagggaatagtaaacatggcacaatcattgaaagcctagtacat 440
Query: 238 gcattatgagagtgtcagggattcctattaatttatgaacataatatacattcataattc 297
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcattatgagaatgtcagggattcctattaatttatgaacataatatacattcataattc 500
Query: 298 taatgaccagttagagggtgagaggatgtaaggctctattcattgttccaacacatgttg 357
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taatgaccagttagaggatgagaggatgtaaggctctattcattgttccaacacatgttg 560
Query: 358 ttatgtatttttttccctttgaagtaggaagaaaaaagatactgactgatgaaaaatcta 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatgtatttttttccctttgaagtaggaagaaaaaagatactgactgatgaaaaatcta 620
Query: 418 cctgagattaggcagtaaggactttagtagttgagaaatatgatgtaagcccttttcttg 477
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctgagattaggcaataaggactttagtagttgagaaatatgatgtaagcccttttcttg 680
Query: 478 cttttttcctcccttcactggtctcttgaag 508
|||||||||||||||||||||||||||||||
Sbjct: 681 cttttttcctcccttcactggtctcttgaag 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 911
Length adjustment: 10
Effective length of query: 498
Effective length of database: 901
Effective search space: 448698
Effective search space used: 448698
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
