BAC Information

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BAC

Clone NameMSMg01-346I04
Chromosome10 (Build37)
Map Location 99,409,368 - 99,409,728
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502, Csl, LOC100042246
Downstream geneKitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346I04.T7 (MSMg01no346_i04.b1)MSMg01-346I04.TJ (MSMg01no346_i04.g1)
ACCAG459078AG459079
length748677
length of high quality
(start - end)
368 (40 - 407)150 (75 - 224)
definitionCHROMAT_FILE: MSMg01no346_i04.b1 PHD_FILE: MSMg01no346_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:13 2005CHROMAT_FILE: MSMg01no346_i04.g1 PHD_FILE: MSMg01no346_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GCAAAACCGCTACATTTTTTATTAATACCATCGTCCCTTCTAAATTATGC
CTACAGATTTGCATGATGTTTGCCTTATCGTTTACGTTCCTGTCATAAAT
TTCTGAGGTTGTCCTTACGAACAAACGCTAGGGCAAGAATTTCAGTGTAA
GTCATTTATCTCGGAGGTTATTGTAGAAAGCATTAGAGGGAAAGTCAGTC
AGACAGAAGACTAAGCTTAAAACAAAAACCATTCAGAATCCAGCTAATTA
TCCGTGAGGGCCCACTGTGAAGCACCCTGAGAAATAGAGTAGAATGTTTC
TCAAAGGTACCCACACAAGTGGTGAGACCTAGGCAGTCGTGTGCCCTGTA
ACTGCATCTCAGTCACTGATGGAAAGTATCCCTGATGGTCCATCAAGATC
CCATCCTCTGAGGCATCACTATCACCTTACCCCGCGTATCATGTTCATCA
AGTATCGCTTGCCTGATGAACCGTGCCCCACTATGTGTTCTCATTACCAT
TTTTTTTCCCACCTGGAACCATTTCTTTGGACCTCCTCCTCCTGCCTTCT
ACTTTGATTATTTTCTGATAATATCTTGCCCTCCATCACCAATTTTATTC
TTTTTTTCTCCCTCCTCCTCCCCCTTTTTTTTTCTTCTTCTATATACTGC
TCTATATTTTTGCTCTACATATCCTGTCTACTATTATACTTGTCCTCT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTGGGCTACTCTAACAAATGAATGA
ATTTAAAGAGGCATAGTGGAAATCTCATCCTACGGCATCAGAAGTTCTAG
GAACTAAACATCAGCCAGTTCTGAAGTGAGGGCAGTGTGTGGCATTGACC
TCTCAACCCATGGGACCTGATGCTGTCTCGGTAGGTTTACCTAAGATGAA
TTGATTAGAGGCACTCAGAAGTGACTACTGCATACTTTAGAGAATACATT
GGATTATAGGATAATATGACTCTGAGTATGAAAGCTGAACTTGAGGCATT
TTCCTCTTCTAAGCACTAAGAGTCAGTCTTCAATGGAATTATGGGGCTTA
ATATGTTGGAAAAAATGCTGGATGGCCTGGTTCTTATCCACCAGGGCAAA
AAGGTGGGAGGGGCCAAAAAAAAAATCCCCGGCTAATTTTTTCACGACAT
TTTCCTTCTTCAAAACGGGGAGTTTCGCTTTTTAAACCCTCTTGGCCCTC
TAAACAGTGGTTTTTTCCCCCGGAAGAATTTATTTTTCCTCTTAACGCCT
TCTCTCGTGTGGGGGTCCCTCTCCGAGGCCTTTCCTTTTTTCTGTGGGTA
AACACCTTGTTTTAAAACCCTTTCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_i04.b1 MSMg01no346_i04.b1 CHROMAT_FILE:
MSMg01no346_i04.b1 PHD_FILE: MSMg01no346_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:13 2005
         (368 letters)



>mm_chr10_99409164_99409931
          Length = 768

 Score =  667 bits (345), Expect = 0.0
 Identities = 357/361 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagcaaaaccgctacattttttattaataccatcgtcccttctaaattatgccta 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcaaaacagctacattttttattaataccatcgtcccttctaaattatgccta 264

                                                                       
Query: 65  cagatttgcatgatgtttgccttatcgtttacgttcctgtcataaatttctgaggttgtc 124
           |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 265 cagatttgtatgatgtttgccttatcgtttaagttcctgtcataaatttctgaggttgtc 324

                                                                       
Query: 125 cttacgaacaaacgctagggcaagaatttcagtgtaagtcatttatctcggaggttattg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttacgaacaaacgctagggcaagaatttcagtgtaagtcatttatctcggaggttattg 384

                                                                       
Query: 185 tagaaagcattagagggaaagtcagtcagacagaagactaagcttaaaacaaaaaccatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagaaagcattagagggaaagtcagtcagacagaagactaagcttaaaacaaaaaccatt 444

                                                                       
Query: 245 cagaatccagctaattatccgtgagggcccactgtgaagcaccctgagaaatagagtaga 304
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagaatccagctaattatccctgagggcccactgtgaagcaccctgagaaatagagtaga 504

                                                                       
Query: 305 atgtttctcaaaggtacccacacaagtggtgagacctaggcagtcgtgtgccctgtaact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgtttctcaaaggtacccacacaagtggtgagacctaggcagtcgtgtgccctgtaact 564

            
Query: 365 g 365
           |
Sbjct: 565 g 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)