BAC Information

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BAC

Clone NameMSMg01-346J08
Chromosome10 (Build37)
Map Location 24,360,129 - 24,360,560
singlet/doubletsinglet
Overlap genenone
Upstream geneRps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7, Moxd1, LOC628537, Ctgf
Downstream geneEnpp1, Enpp3, Crsp3, Arg1, EG667479, LOC212399, Akap7, LOC665800, Epb4.1l2, 2010003K15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346J08.T7 (MSMg01no346_j08.b1)MSMg01-346J08.TJ (MSMg01no346_j08.g1)
ACCAG459134AG459135
length729745
length of high quality
(start - end)
520 (38 - 557)192 (67 - 258)
definitionCHROMAT_FILE: MSMg01no346_j08.b1 PHD_FILE: MSMg01no346_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:19 2005CHROMAT_FILE: MSMg01no346_j08.g1 PHD_FILE: MSMg01no346_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCGTC
ACCCATCACTTAACATCTTCACTGTGCACACGACAAATGACACAGTGATG
TAACTTCCCCTCACCGACATTGCCACTGACATTGATGTAATAACTTAGAA
GGTGTTGTTTTGTGTTACCCATAGCCTCTGGCATGCATATCTTTCAGTCT
GTTCTTTCCAAGTTTGCTACTTCCTGCCAGTCTGTCTAAGGTTTTGTTTG
GTTTTTATGCTACCTTTTATCCATTCTGTTGTTCCCAGTAGGTTTATATA
TAGGCTACTGTTTTATTTGTAAAATGTTATTTGTGTTTTGCTTCTTTATG
TCTTCTATTTGCTGAAATTTTTTATTGCTTCCATTGAGTATCAATTTCTT
CATTTGTTTCATGTGCATTTGCGGTTGCTGGTTGGAACATTTTTACGATG
CTGTTGTACAGTGCTCGTTGGTACATCCTCACTTCCTCTGTCAATGTTTG
TTTCTATGTGTAGTGGGTTTCTCTTGTCTTCACATATTTTTTTTGCTTCT
CATGATTGTTTTAAATTAAAAACTGGATATTTTANGCATTCTATCTTAAC
ATTCTGCATCTTCCGNAAATCTCCTCTGACATCATCCCTGCAAAAATAAT
GGGGACTCGGCCTCCCTCTTAATTTCTGGGAGATGAGAATTTCCCCCCCC
CCCTGGAATAAGAAGGAAAGAGTAACTGG
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCCTTCAGTAACAGACTACATGTGGAAGTATAA
GCCAAATAAACCCTTTCCTCCCCAACTTGCTTCTTAGTCATGGTGTTTTG
TTACAGCAATAGAAACCTGAACTAAGACAAAACCCAAGTGTTAACTGAGG
TGGGAGGGGATTCGGGGGGTCTGAGTTATGAGATGGGTGTGGAGGGGNAC
CCCTGNNANNAGNGNNANNCNGNTGCTGCCCTGCCNTCNCNGCTCACTCT
CTCTGATTCTCTNGAGAGAGAGGCTTCCTCCCTCATACATCTAACCAAAT
TTCCAGTATTAATTATTTTGAAACATACAAAAATATCAAGAAGTGCGTGC
TGTTTATATGCTGAAATAATAATATTGTATTAAATAAAACCTAACACTAA
CATGTGGTATATAACATTAACATATTAAAATACATTATTAGTGATAATCT
ATATGAAAAACAAATGGAAAATTTATGGTAGTTTCTATATAACTTAATAT
ATTACAAACCACGGGTATAATTTTACCCATTTCTTCTCTCTTAACGAAAC
TTCCCGAAAGTTTTGAATCTGCCTTTTCCACCCTTCCTTGGGNCACGGTG
CCCTTGCTTCCTTTTGCCGGGGGTTTTCCCTCCTTGGTTTATTACCACTC
ATTTTTTTGTCCCGCTTGAGACATTTTGAATATCCGCCCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_j08.b1 MSMg01no346_j08.b1 CHROMAT_FILE:
MSMg01no346_j08.b1 PHD_FILE: MSMg01no346_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:19 2005
         (520 letters)



>mm_chr10_24360129_24361048
          Length = 920

 Score =  828 bits (428), Expect = 0.0
 Identities = 431/432 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcgtcacccatcacttaacatcttcactgtgcacacgacaaatgacacagtgatgt 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gaattcgtcactcatcacttaacatcttcactgtgcacacgacaaatgacacagtgatgt 373

                                                                       
Query: 65  aacttcccctcaccgacattgccactgacattgatgtaataacttagaaggtgttgtttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aacttcccctcaccgacattgccactgacattgatgtaataacttagaaggtgttgtttt 313

                                                                       
Query: 125 gtgttacccatagcctctggcatgcatatctttcagtctgttctttccaagtttgctact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gtgttacccatagcctctggcatgcatatctttcagtctgttctttccaagtttgctact 253

                                                                       
Query: 185 tcctgccagtctgtctaaggttttgtttggtttttatgctaccttttatccattctgttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tcctgccagtctgtctaaggttttgtttggtttttatgctaccttttatccattctgttg 193

                                                                       
Query: 245 ttcccagtaggtttatatataggctactgttttatttgtaaaatgttatttgtgttttgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ttcccagtaggtttatatataggctactgttttatttgtaaaatgttatttgtgttttgc 133

                                                                       
Query: 305 ttctttatgtcttctatttgctgaaattttttattgcttccattgagtatcaatttcttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ttctttatgtcttctatttgctgaaattttttattgcttccattgagtatcaatttcttc 73

                                                                       
Query: 365 atttgtttcatgtgcatttgcggttgctggttggaacatttttacgatgctgttgtacag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  atttgtttcatgtgcatttgcggttgctggttggaacatttttacgatgctgttgtacag 13

                       
Query: 425 tgctcgttggta 436
           ||||||||||||
Sbjct: 12  tgctcgttggta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)