BAC Information

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BAC

Clone NameMSMg01-346K06
Chromosome10 (Build37)
Map Location 36,395,508 - 36,582,270
singlet/doubletdoublet
Overlap geneHs3st5
Upstream geneLOC100041585, LOC667860
Downstream geneHdac2, Marcks, LOC100040846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346K06.T7 (MSMg01no346_k06.b1)MSMg01-346K06.TJ (MSMg01no346_k06.g1)
ACCAG459178AG459179
length752737
length of high quality
(start - end)		453 (38 - 490)460 (68 - 527)
definitionCHROMAT_FILE: MSMg01no346_k06.b1 PHD_FILE: MSMg01no346_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:23 2005CHROMAT_FILE: MSMg01no346_k06.g1 PHD_FILE: MSMg01no346_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,581,822 - 36,582,270)(36,395,508 - 36,395,967)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATC
TTACTACGACTTTAAAAATGTTGTAAGATCATTTGTGGTAGCAAGGTCAA
AAAGCTGCTGACATGGGTAGCCTTCCTCTTTCTCTTGTTTTGTGAGGACC
CAGCCTCTGAGACAGGGGCTGTGCCTCCTACGCAGATGCATTTCTGGCCC
CAAGAGAACAGTCTAAACCAAGATCAGACAGATAGAATGACAGCATCTAC
ATTGTATGTTTGTTTTATTTTGTGTTAAATTACTTCTTTTTTTCTTCTTG
ACTTTAGTCTAATGGTCCTTTGCCATCTTGGAGTTAAGTGGCAGATAATG
CATCCTCTCTTATCATCCGTCTGTTTCCCCTGTGTGCTCTGGGTACATTT
CCCATAACAATTTAGTGTTCTCAATTTCTACCTTATTTAAAGACATTTGA
AAAGTTGTGAATGACTAGTTTGATACTTTCCAAACTTTAAATTCACCTGC
CATTTATAGATTGCCCTTCTCCCCCCATCCCCCTTTTAAATGTTTTTAGC
TTTGCTGTTTTTGAAGACCTTTTGGAGTTATGAATAACAACTGCACGATA
CCATGAATCTGCCCTTCCACCTGGCTTATTGCTATGTTTTTCCATGGAAT
ATAAAAATATATATTCACCCTCCCCCCCTTTTTTATTATTTTTTGAGTCC
GCTCCCCTTTTTTTTAACATTTCTTTCCCACCACACTTAATTTTTTTCCC
AN

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATGTACAGCCCATTTTCTGGTGCCACCTGTAGT
TCTGGTCTTTCTGTCTAGCCTGGCATTAAATGCTTATTCTTTTCCCATCT
CATTCCGCCTAGTAAAAAAGGTATCTTTGCCCTTGGCTGCTACCTCCCTC
CACCGACATGACTGTCTCCCCTTTTCAGATGGCCTGCTTTGGGGATCCAA
GAAAGATCTGTTGGTCATAGAATCCAGTCTGACTTACTGAATTCCAATAT
GGAAAAAAGGGATACCATCCCAACCTCAGTACACAGGTTTCTAGAGATTT
TCAGACCTGCATAATGGCTTCAAAATCTCCCATGGAATGTGGCTTGTTGT
GTCTTTTTATTCTCCCAAAATGTCCACTTAATATTGTTCAGTGAACAGGA
GCCAGCTTTTAGAGAATTAATTATTTATGGCCTTGCAGATTTTGTGAATG
ATAGGATAAAATGTCTAAATGAATTCAGTTAGAATTACAGAGTTGGGTTT
TAAGCTAATTACCCTCCATTGAATTTGTTTCCATTAATATGACTCCTTTT
TTCTCCCTAAATATGCCTTGGATCCCTCTCTCTCCTTTTATATTTCCTCC
TTCCCCCAATCACATATCTTCCTTCTCTTAACTTTCACAAGCTAATTTTC
ATTCTTTTCCAATACCTTTTCAACATCTTGTGTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_k06.b1 MSMg01no346_k06.b1 CHROMAT_FILE:
MSMg01no346_k06.b1 PHD_FILE: MSMg01no346_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:23 2005
         (453 letters)



>mm_chr10_36581618_36582470
          Length = 853

 Score =  853 bits (441), Expect = 0.0
 Identities = 447/449 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcttactacgactttaaaaatgttgtaagatcatttgtggtagcaaggtcaaa 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gaattcatcttactaggactttaaaaatgttgtaagatcatttgtggtagcaaggtcaaa 594

                                                                       
Query: 65  aagctgctgacatgggtagccttcctctttctcttgttttgtgaggacccagcctctgag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aagctgctgacatgggtagccttcctctttctcttgttttgtgaggacccagcctctgag 534

                                                                       
Query: 125 acaggggctgtgcctcctacgcagatgcatttctggccccaagagaacagtctaaaccaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 acaggggctgtgcctcctacgcagatgcatttctggccccaagagaacagtctaaaccaa 474

                                                                       
Query: 185 gatcagacagatagaatgacagcatctacattgtatgtttgttttattttgtgttaaatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gatcagacagatagaatgacagcatctacattgtatgtttgttttattttgtgttaaatt 414

                                                                       
Query: 245 acttctttttttcttcttgactttagtctaatggtcctttgccatcttggagttaagtgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 acttctttttttcttcttgactttagtctaatggtcctttgccatcttggagttaagtgg 354

                                                                       
Query: 305 cagataatgcatcctctcttatcatccgtctgtttcccctgtgtgctctgggtacatttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cagataatgcatcctctcttatcatccgtctgtttcccctgtgtgctctgggtacatttc 294

                                                                       
Query: 365 ccataacaatttagtgttctcaatttctaccttatttaaagacatttgaaaagttgtgaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ccataacaatttagtgttctcaatttctaccttatttaaagacatttgaaaagttgtgaa 234

                                        
Query: 425 tgactagtttgatactttccaaactttaa 453
           |||||||||||| ||||||||||||||||
Sbjct: 233 tgactagtttgagactttccaaactttaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no346_k06.g1 MSMg01no346_k06.g1 CHROMAT_FILE:
MSMg01no346_k06.g1 PHD_FILE: MSMg01no346_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:23 2005
         (460 letters)



>mm_chr10_36395308_36396167
          Length = 860

 Score =  859 bits (444), Expect = 0.0
 Identities = 456/460 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtacagcccattttctggtgccacctgtagttctggtctttctgtctagcctggcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtacagcccattttctggtgccacctgtagttctggtctttctgtctagcctggcatt 260

                                                                       
Query: 61  aaatgcttattcttttcccatctcattccgcctagtaaaaaaggtatctttgcccttggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgcttattcttttcccatctcattccgcctagtaaaaaaggtatctttgcccttggc 320

                                                                       
Query: 121 tgctacctccctccaccgacatgactgtctccccttttcagatggcctgctttggggatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctacctccctccaccgacatgactgtctccccttttcagatggcctgctttggggatc 380

                                                                       
Query: 181 caagaaagatctgttggtcatagaatccagtctgacttactgaattccaatatggaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagaaagatctgttggtcatagaatccagtctgacttactgaattccaatatggaaaaa 440

                                                                       
Query: 241 agggataccatcccaacctcagtacacaggtttctagagattttcagacctgcataatgg 300
           ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 agggagaccatcccaacctcagtacacaggtttctagagattttcaggcctgcataatgg 500

                                                                       
Query: 301 cttcaaaatctcccatggaatgtggcttgttgtgtctttttattctcccaaaatgtccac 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 cttcaaaatctcccatggaatgtggcttgttgtgtctttttattctctcaaaatgtccac 560

                                                                       
Query: 361 ttaatattgttcagtgaacaggagccagcttttagagaattaattatttatggccttgca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaatattgttcagtgaacaggagccagcttttagagaattaattatttatggccttgca 620

                                                   
Query: 421 gattttgtgaatgataggataaaatgtctaaatgaattca 460
           |||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 gattttgtgaatgaaaggataaaatgtctaaatgaattca 660


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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