BAC Information

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BAC

Clone NameMSMg01-346L09
Chromosome10 (Build37)
Map Location 24,905,292 - 24,905,692
singlet/doubletsinglet
Overlap geneAkap7
Upstream geneStx7, Moxd1, LOC628537, Ctgf, Enpp1, Enpp3, Crsp3, Arg1, EG667479, LOC212399
Downstream geneLOC665800, Epb4.1l2, 2010003K15Rik, EG667513, LOC667519, LOC628697, C030003D03Rik, LOC100040851, LOC15352
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346L09.T7 (MSMg01no346_l09.b1)MSMg01-346L09.TJ (MSMg01no346_l09.g1)
ACCAG459232AG459233
length753743
length of high quality
(start - end)		407 (37 - 443)409 (67 - 475)
definitionCHROMAT_FILE: MSMg01no346_l09.b1 PHD_FILE: MSMg01no346_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:28 2005CHROMAT_FILE: MSMg01no346_l09.g1 PHD_FILE: MSMg01no346_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGGG
AGGCGCCTGGGAACCAGTTAGAGTAAAAACAGGAGGGACAATGAGGAGCT
AACATATCAAGACAGCGTCTTACTGAAAATGGAAGATCTATGAGAAGACT
CATTGGCTGATGAGCACAAACAAGACAGCCTGCCTGAACATTGTCGGCAC
TCTACCTCTCCCTACGTTCAGTCATGTGCACACACGTGTGTCCATTTGTG
TGCTCATGTGTGTCCACGTGTATGTGTGATGGCTTTTTTTTTTCTTTTTA
AGACAGGGTTCCTACCTTGGGGCTCATTCAGTGTGGCAAGATTGAATGGC
CACCTAGCCGCCGCAGGAGTCTTGCCTGTCTGTTTCTGTGTCTCTAGTGC
TGAGGCCATGAATGTGTGCAGCTTCCTCGGCACTTTTGTGTGAGTTCTGG
CGGTTGAACTAGCCTCCATGCGCTTGCGCGTCATTTTTTTACCACTATTC
ACTATTCATTAACCACTAACCACTAATCACTACCCCCCATCCATTACTCT
CTAACCCAACCCCTTTATTCACTAACCATTCATTTTCTCACCATTAACTC
CTTACTCCACGACAAGTGTTCCCAACCCCCAATCCGCTAGCTTTTTTTAT
TCCCCCATCTTGTTTGCGCCATTCCTCTCCTCCTTTTTTCCCCCCTCCTC
AATTTTTCACACCCTCCCCTCTTGTTTACTGATATCCCTTTTATATCCCC
CCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGTACC
TGAAAAAATGTTCAACATCCGTAATCATCAGGGAAATGCAAATCAAATCA
ACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTC
AGGTGTCAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGG
TTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCT
CCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCT
CCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAA
CCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTA
CACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCC
TAAGCAAGTGGATGTACCTGGCGGGCATCATCCTGAGTGAGGAACCCCTT
TCCCCAAGGATTTCCCTCATTATGTATTCCCTTGAAAGGGGATTTTACCC
CAAAAACTTAGTATCCCCTTGTATTTCCAAACTATTTGTTTAGTGCCCGA
AATAAATAATAAAAATCTATCCGGTGGATCCTTGTCCCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_l09.b1 MSMg01no346_l09.b1 CHROMAT_FILE:
MSMg01no346_l09.b1 PHD_FILE: MSMg01no346_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:28 2005
         (407 letters)



>mm_chr10_24905236_24906042
          Length = 807

 Score =  708 bits (366), Expect = 0.0
 Identities = 394/406 (97%), Gaps = 8/406 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgggaggcgcctgggaaccagttagagtaaaaacaggagggacaatgaggagc 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ggaattctgggaggtgcctgggaaccagttagagtaaaaacaggagggacaatgaggagc 398

                                                                       
Query: 64  taacatatcaagacagcgtcttactgaaaatggaagatctatgagaagactcattggctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 taacatatcaagacagcgtcttactgaaaatggaagatctatgagaagactcattggctg 338

                                                                       
Query: 124 atgagcacaaacaagacagcctgcctgaacattgtcggcactctacctctccctacgttc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 atgagcacaaacaagacagcctgcctgaacattgtcggcactctacctctccctacgttc 278

                                                                       
Query: 184 agtcatgtgcacacacgtgtgtccatttgtgtgctcatgtgtgtccacgtgtatgtgtga 243
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 277 agtcatgtgcacacacgtgtgtccatttgtgtgctcatgtgtgtccatgtgtatgtgtga 218

                                                                       
Query: 244 tggctttttttttt--ctttttaagacagggttcctaccttggggctcattcagtgtggc 301
           ||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 217 tggcttttttttttttctttttaagacagggttcctatcttggggctcattcagtgtggc 158

                                                                       
Query: 302 aagattgaatggccacctagccgccgcaggagtcttgcctgtctgtttctgtgtctct-a 360
           ||||||||||||||||||||||||||||||||||||||||||    |||||||||| | |
Sbjct: 157 aagattgaatggccacctagccgccgcaggagtcttgcctgt----ttctgtgtct-tca 103

                                                         
Query: 361 gtgctgaggccatgaatgtgtgcagcttcctcggcacttttgtgtg 406
           ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 102 gtgctgaggtcatgaatgtgtgcagcttcctcggcacttttgtgtg 57


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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