BAC Information

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BAC

Clone NameMSMg01-346L12
Chromosome10 (Build37)
Map Location 78,813,663 - 78,814,192
singlet/doubletsinglet
Overlap genenone
Upstream geneAgpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709
Downstream geneEG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346L12.T7 (MSMg01no346_l12.b1)MSMg01-346L12.TJ (MSMg01no346_l12.g1)
ACCAG459238AG459239
length731738
length of high quality
(start - end)		542 (38 - 579)522 (68 - 589)
definitionCHROMAT_FILE: MSMg01no346_l12.b1 PHD_FILE: MSMg01no346_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:29 2005CHROMAT_FILE: MSMg01no346_l12.g1 PHD_FILE: MSMg01no346_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGT
TTGCCTGTTACCTATTCAGTAACATTCAAATTCACTTCTAGTAGAGACAA
TGAAACTATTTAGGCATTACAAAGAACAGAGCTAGAAAAGCTCAGGGCTA
GTCTGCATAGTAATTACTTAGGACAATAGCCGAGTCACACCCAAACACAG
GAATACATAATGGCCTGGCAAATAGGTGGGTTGTCTCATGAAAGAGTTAG
TGGAAGGGAATTCTCCTGGTACAGGTTTTTTCACTAGGTCCAAGAGGAAT
AGCATAATCAGGTATTTACTAAAGAATCCCTGGTGGTAGGTTTAACAGTA
GACTAGCATTGCATCAGAGCATTCAACTGGCTCCTGTGCTTAGCTGATCT
TTTTAATTAAGTGGTAAATGCAGCCTGGATCCTGCCATCTTTTTATGAAT
GCATTCTTTTTGTTTTGTGTCACTGTGACTTGGCAGATGTGTTCTCCTGG
CTTTTCTTGTTTTTCTTCTGTATTAAAAGTCTGGTGTTCATTTGGACAAA
ATACATTCAGATCCAGCACACTCTCTCGTGCCTGTGTCTGTCAATACTCA
CAGACTCCATGCACCCCTGCCAGAACCCCTGATTCCCACAGATTGATAGG
GGCCCACTGCATCAGGTTTGTGGCATAGATACTTATCCCATCCCGTTGAA
ACCGGCTGCTGCCCTCTGCGGTTGACCCTTG

GTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACCAGAACAGAATAAGAAAGAAATGGGAAAGTA
AGATTTAATGGAATGATTATGCACATCAAGTACAACTGAAAAGCAGTCAC
ATAGATGAAATCTATAGAGCTGTTGTCCAGAAATCAAGCCATGATAAATG
GGAACAACACTTTTACAAACAAGCTGCCTGACATTCTGAGATTTCACCAT
CCAAGCCTGATGAGGGTAGGTTCTTATTTCTGATGGCAAGTTCCTTGGAG
AGCTGTGTCTCCTGCTTTACAGGGTCATAAATGTCATTCTAGCTCAAAGG
AACAGGATCCTCTCTCCTTTAGAGATAATTACAATTGTGTTAATATTTAT
AGTCATGAAGGCACACACACACACACTCACACAATTACAAATAACCTTCA
ATTCTTAACATAAAATTCATAAATATGTTGTAAGCATCTGTTTATTGAAA
AATAAGGCATGCCTAAAGTTTCTACTTGGCATTTGCATGTAACAAAATTT
CATGAAATGAAGCCTGTGAATTTAAATGAAAGCAAAGACATGTTTATTAG
AGTGTTGGGAAAAAAGAATGGAAAGGAAAAGGCAGGGAAAATATCTATTA
CTTAATAATCCCAAACTATTAAAAGTACTTTTTAAATGAAAAACAATTTT
CAATACATGGGAGTTTTTAAAACTTGTGGCGTGAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_l12.g1 MSMg01no346_l12.g1 CHROMAT_FILE:
MSMg01no346_l12.g1 PHD_FILE: MSMg01no346_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:29 2005
         (522 letters)



>mm_chr10_78813475_78814396
          Length = 922

 Score =  685 bits (354), Expect = 0.0
 Identities = 483/540 (89%), Gaps = 32/540 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   accagaacagaataagaaagaaatgggaaagtaagatttaatggaatgattatg--ca-- 56
           |||||| |||   ||||| |||||||||||||||||||||||||||||||||||  ||  
Sbjct: 189 accagagcag---aagaatgaaatgggaaagtaagatttaatggaatgattatgtacacc 245

                                                                       
Query: 57  -catcaagtacaactgaaaagcagtcaca-tagatgaaatctatagagctgttgtccaga 114
            || |||||||||||||||||||||||||  | |||||||||||||||||||||||||||
Sbjct: 246 gcaccaagtacaactgaaaagcagtcacacca-atgaaatctatagagctgttgtccaga 304

                                                                       
Query: 115 aatcaagccatgataaatgggaacaacacttttacaaacaagctgcctgaca--ttctga 172
           |||||||||||||||||||||||||||| ||||||||||||||||||| |||  ||||||
Sbjct: 305 aatcaagccatgataaatgggaacaacatttttacaaacaagctgcctaacagcttctga 364

                                                                       
Query: 173 gatttcaccatccaag-cctgatgagggtaggttcttatttctgatggcaagttccttgg 231
           ||||||||||||| || |||||||||||||||| ||| |||||| ||||||||||| |||
Sbjct: 365 gatttcaccatcc-agacctgatgagggtaggtccttctttctggtggcaagttccctgg 423

                                                                       
Query: 232 agagctgtgtctcctgctttacagggtcataaatgtcattctagctcaaaggaacaggat 291
           |||||| ||||||||| |||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct: 424 agagctatgtctcctg-tttacagggtcacaaatgccattctagctcaaaggaacagaat 482

                                                                       
Query: 292 cctctctcctttagagataattacaattgtgttaatatttatagtcatgaaggcacacac 351
           ||||||||||| |||||||| | ||||| ||||||||| || |||||||| ||    |||
Sbjct: 483 cctctctccttcagagataactgcaattatgttaatatctacagtcatgaggg----cac 538

                                                                       
Query: 352 acacacactcacacaattac-------------aaataaccttcaattcttaacataaaa 398
           ||||||||||||||||||||             |||||||||||||||||||||||||||
Sbjct: 539 acacacactcacacaattacaaataaatcttataaataaccttcaattcttaacataaaa 598

                                                                       
Query: 399 ttcataaatatgttgtaagcatctgtttattgaaaaataaggcatgcctaaagtttctac 458
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ttcagaaatatgttgtaagcatctgtttattgaaaaataaggcatgcctaaagtttctac 658

                                                                       
Query: 459 ttggcatttgcatgtaacaaaatttcatgaaatgaagcctgtgaatttaaatgaaagcaa 518
           || |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 659 ttagcatttgcatgtaacaaaatttcaagaaatgaagcctgtgaatttaaataaaagcaa 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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