BAC Information

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BAC

Clone NameMSMg01-346L17
Chromosome10 (Build37)
Map Location 66,072,236 - 66,072,838
singlet/doubletsinglet
Overlap genenone
Upstream gene1700023F02Rik, 4930407I19Rik
Downstream geneReep3, Jmjd1c, Nrbf2, Egr2, Gm237, LOC100040081
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346L17.T7 (MSMg01no346_l17.b1)MSMg01-346L17.TJ (MSMg01no346_l17.g1)
ACCAG459248AG459249
length751750
length of high quality
(start - end)
513 (33 - 545)602 (62 - 663)
definitionCHROMAT_FILE: MSMg01no346_l17.b1 PHD_FILE: MSMg01no346_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:30 2005CHROMAT_FILE: MSMg01no346_l17.g1 PHD_FILE: MSMg01no346_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTGTGGC
CACTCATTGGTTTAAAGAACAATACAGACTTTCTTTCAATAAAATTTTAA
ACGTTATATAATTATTTTAGATTACACACACACACACACACACACACACA
CACACACACACACACACATGATTACATATAAATAGGTATTGTAGTGGTTG
GGATTGTCAACTCAACAAAATCTAGAACCACTTGGGAGATGAGCCTCTTA
ACGTGCCTGTTGGGGGCTGTTATGAGTATCTTATTAGGTTAATTGATGCG
GGAAGACCCATCTTAATTGTGAACAGGACCACTCCCCTAGTCTGGGGAAT
CCTAGACTACATGGATGGAGACAGTAGGTTGAACATGCATTTGTGGTTCC
CAACTTCCTGACTGTGAATATCATGTGACCAGCTCCTCCATCTTGACCCT
CTCACTATGATGAACCTCATCCTTGAACTGTGAGACAGACTGAGTCCTTT
GCCCCTTCAGTGGGTTTTGTCAGAGTACTCTGTCACAGCAACAAGGAAAA
TAAGACAAACACCATGGGGGTGTCTTGCTGTGTGTAACGCTCAGGTCAGG
ATAAGCCTGACTGTTCCTTTAACAATAAACACTTCTGTATCACCCTGGAT
GGACTTTCTGCTATAAAATCCCAACAGCGCCCGGTGGTTCTTCACCGCGC
CAAATTATTTTCCTTTATCTTTTCTCCTTATATCACACCTTTACCCATTA
C
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXAGAATATCTGGCTCTCCCATTAAAGAACCCTTCAGATGA
AGCCCTGGTTTCTTTCTATAGACAATGCAGGGATTATGGGGTCTGGGTCC
ACCAAGATCCTCACAGAGAAACAAACCAGGAAGAGACAGATATTAGGAGA
TGCTCGCAGGGCATTGGTTCCTACAGCTGTGAAACCCAGTTCAGCAAGTC
TGAAGCCCTCATGAAGCCAGCAAGTGATACACACTGATACTCTCGGCATA
GGCTTGTGTAGAGCCACCTCCAGAAATCCGTCTTCTGGGAGCTTCCATCT
GACTGGATGGGCCTCACTTACCTTATCCAAGAAAGTCCTTGACTCAGAGG
CAACTTATCCTTACTGTTACCTACACCCACTGTCTTAGTCAAGGTTTCTA
TTCCTCCACAAACATCACGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTT
ATTCAGCTTACATTTCCACATTGCTGTTCATCACCAAAGGAAGTCAGGAC
TGGAACTCAAACAGGTCAGAAAGCAGGAGCTGATGCAGAAGCCATGGAGG
GATGTCACTTCTGGCTTGCTTCCTCTGACTTGCTCAGCTTGCTTTCTTAT
AGAACACAGGACTACTAGTCCAGGGATGGGACCACCTACATTCGGCCCTC
CCCGCTTGATCACTAATGGAGAAAATGCCCCCTCGTTGGATTTTTTGGAG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_l17.g1 MSMg01no346_l17.g1 CHROMAT_FILE:
MSMg01no346_l17.g1 PHD_FILE: MSMg01no346_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:30 2005
         (602 letters)



>mm_chr10_66072036_66073038
          Length = 1003

 Score = 1013 bits (524), Expect = 0.0
 Identities = 584/604 (96%), Gaps = 3/604 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaatatctggctctcccattaaagaacccttcagatgaagccctggtttctttctatag 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaacatctggctctcccattaaagaacccttcagatgaagccctggtttctttctatag 260

                                                                       
Query: 61  acaatgcagggattatggggtctgggtccaccaagatcctcacagagaaacaaaccagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaatgcagggattatggggtctgggtccaccaagatcctcacagagaaacaaaccagga 320

                                                                       
Query: 121 agagacagatattaggagatgctc-gcagggcattggttcctacagctgtgaaacccagt 179
           ||||||||||| |||||||||||| ||||| ||||||||| |||||||||||||||||||
Sbjct: 321 agagacagatactaggagatgctctgcaggacattggttcatacagctgtgaaacccagt 380

                                                                       
Query: 180 tcagcaagtctgaagccctcatgaagccagcaagtgatacacactgatactctcggcata 239
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 tcagcaagtctgaagccctcatgaagccagcaagtgatacacaccgatactctcggcata 440

                                                                       
Query: 240 ggcttgtgtagagccacctccagaaatccgtcttctgggagcttccatctgactggatgg 299
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 ggcttgtgtagagccacctccagaaatccttcttctgggagcttccatctgactggatgg 500

                                                                       
Query: 300 gcctcacttaccttatccaagaaagtccttgactcagaggcaacttatccttactgttac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcctcacttaccttatccaagaaagtccttgactcagaggcaacttatccttactgttac 560

                                                                       
Query: 360 ctacacccactgtcttagtcaaggtttctattcctccacaaacatcacgaccaagaagca 419
           ||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||
Sbjct: 561 ctacacccactgtcttagtcagggtttctattcctgtacaaacatcacgaccaagaagca 620

                                                                       
Query: 420 agttggggaggaaagggtttattcagcttacatttccaca-ttgctgttcatcaccaaag 478
           |||||||||| ||||||||||||||||||||| ||||||| || ||| |||| |||||||
Sbjct: 621 agttggggagaaaagggtttattcagcttacacttccacactt-ctgatcattaccaaag 679

                                                                       
Query: 479 gaagtcaggactggaactcaaacaggtcagaaagcaggagctgatgcagaagccatggag 538
           ||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 680 gaaatcaggactggaactcaagcaggtcaggaagcaggagctgatgcagaagccatggag 739

                                                                       
Query: 539 ggatgtcacttctggcttgcttcctctgacttgctcagcttgctttcttatagaacacag 598
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 740 ggatgtcacttctggcttgcttcctctgacttgttcagcttgctttcttatagaacacag 799

               
Query: 599 gact 602
           ||||
Sbjct: 800 gact 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1003
Length adjustment: 10
Effective length of query: 592
Effective length of database: 993
Effective search space:   587856
Effective search space used:   587856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)