BAC Information

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BAC

Clone NameMSMg01-347B18
Chromosome10 (Build37)
Map Location 67,091,794 - 67,092,198
singlet/doubletsinglet
Overlap genenone
Upstream geneReep3, Jmjd1c, Nrbf2, Egr2, Gm237, LOC100040081
Downstream geneLOC100039618, Zfp365, Plekhk1, Arid5b, LOC100040136, 1700040L02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347B18.T7 (MSMg01no347_b18.b1)MSMg01-347B18.TJ (MSMg01no347_b18.g1)
ACCAG459531AG459532
length788777
length of high quality
(start - end)		473 (47 - 519)---
definitionCHROMAT_FILE: MSMg01no347_b18.b1 PHD_FILE: MSMg01no347_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:59 2005CHROMAT_FILE: MSMg01no347_b18.g1 PHD_FILE: MSMg01no347_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAATGGGTCAGGTACCTGGAGGCAGGAGCTGACGAGTAGGCTAT
GAAAGGGTGCAGCTTACTGGCTTGCTCCCTGCTTTCTTATAGGACCCAGC
ACCACCAGCCCAGGGATGGCAGTACCCACAAGGGGCTGGGTCCTTCCCCA
CTGATCATTAAGAAAATGCCCTACAGCTAGAAGTTATGGAGGCTTTTTCT
CCCTTGAGGTTCCCTCCCTTCAGATGGCTCTAGCTCGTGTCAAGTTGACA
TAAGCTAGCCAACAGTATTTCTGTCCTGTCACCCTGGATGTGGGTACAGC
TTCACGCTTGCCCTTGTGGTCCCAAGCTGATCCCTGCGTCTTGAGGCTGC
CCATCTTCTCTACAGATAAGGAAGAAAGCGAAAAGGAGAAGAAGAAGGAC
ACAGGGTTAAAGGGAAATGACTAACTAGTCTGTGCCTTTTGTTTTCCGTG
GAAAGGAAAAAAACTTTCTCAGAATCCGCACTTAGATTACTTCTGTTTGT
CCTCTGTTGGATAGAATGTGCCCTATTCGTACCACCATCTTCATAGTGTC
TGTCTTAAACGGTCCTTGTGTTACCCTTCATTTTCCAACTTTCCTTATCA
CTCCCTTTTAGCTTCCCTCTTTGTTTCTGTTAATTCCTGATCTGTTACTC
CTTAACCTTGTTTAAAATTACTCCTTTAGCTCTCCTTTCCTTCCCACTTT
CCTTTTCTTTTCCCATTTTTTATTTCCCACTCCCTTTN

TTCTTTTTTTTTCTTTCTCCTCCTGTTTGTTTGGTTATTTTCTTATCTTT
TTTTNNNCCCGAATGTCCTAATGGTGTXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTCAG
AAAGGCTGAAAAAATTTCCTGGGAACGGAGGCCAAAGTTCTCCAGGAGCC
CTCCAAAGGGGAAAAAGGGGGGTGGGTGGGGTTCTCTTCCTTAGGGNNCC
ACCCCCNCNACCCCTCCCTTTCCTCCCTTCTATTCCTTCCATCACTTGAA
AATTCTTACAGCTGTCTTCTTCTTCCTTTGCCTTCTTCCTCTATTTTGAC
TTCTCTCCTCTACCCCACTCTTTTTTTCTTTCTTTTCCTCATCTCTTTTT
TCACCCCTCTTTAACCTTTTACTCCCCTCTCCCATTAAGTTTTTTTTTCT
TTTATTTCCTCTCCCCCACCATTTTCCTCTCTTATTTTTCTCGCATTTAT
TCTCTTTTCCCGCTCCTTTTTTTATTCTTCCTCACCCCACCTCAATTTTT
TTTTTCCTTATTTTTTCCCCCCCTCCCCCTTCCCTGTCTCTCCCCTCCAC
TTCTATTTCTTTTTTTTTTCCCCCCCTTTTCCCTCCCCCTTTCTTCCTTC
TCTTCTTCCCACCTCCTCCTTCCGCCCCACTACCTTTTTTTATCTTTTTC
CCCCTCGCCCCCCTTCTTTATTCCCCTTACCCCGCTTTTTCTTTCCTTTC
TCCTCCCTCTCCCCTTTATCCACCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_b18.b1 MSMg01no347_b18.b1 CHROMAT_FILE:
MSMg01no347_b18.b1 PHD_FILE: MSMg01no347_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:59 2005
         (473 letters)



>mm_chr10_67091326_67092198
          Length = 873

 Score =  783 bits (405), Expect = 0.0
 Identities = 405/405 (100%)
 Strand = Plus / Minus

                                                                       
Query: 69  tactggcttgctccctgctttcttataggacccagcaccaccagcccagggatggcagta 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 tactggcttgctccctgctttcttataggacccagcaccaccagcccagggatggcagta 814

                                                                       
Query: 129 cccacaaggggctgggtccttccccactgatcattaagaaaatgccctacagctagaagt 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 cccacaaggggctgggtccttccccactgatcattaagaaaatgccctacagctagaagt 754

                                                                       
Query: 189 tatggaggctttttctcccttgaggttccctcccttcagatggctctagctcgtgtcaag 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 tatggaggctttttctcccttgaggttccctcccttcagatggctctagctcgtgtcaag 694

                                                                       
Query: 249 ttgacataagctagccaacagtatttctgtcctgtcaccctggatgtgggtacagcttca 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ttgacataagctagccaacagtatttctgtcctgtcaccctggatgtgggtacagcttca 634

                                                                       
Query: 309 cgcttgcccttgtggtcccaagctgatccctgcgtcttgaggctgcccatcttctctaca 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 cgcttgcccttgtggtcccaagctgatccctgcgtcttgaggctgcccatcttctctaca 574

                                                                       
Query: 369 gataaggaagaaagcgaaaaggagaagaagaaggacacagggttaaagggaaatgactaa 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gataaggaagaaagcgaaaaggagaagaagaaggacacagggttaaagggaaatgactaa 514

                                                        
Query: 429 ctagtctgtgccttttgttttccgtggaaaggaaaaaaactttct 473
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ctagtctgtgccttttgttttccgtggaaaggaaaaaaactttct 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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