Query= MSMg01no349_a03.b1 MSMg01no349_a03.b1 CHROMAT_FILE:
MSMg01no349_a03.b1 PHD_FILE: MSMg01no349_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:30 2005
(547 letters)
>mm_chr10_28674324_28675270
Length = 947
Score = 1050 bits (543), Expect = 0.0
Identities = 546/547 (99%)
Strand = Plus / Plus
Query: 1 tggatactttatccacccagggttgggggtgggagggcagaaacatcttccagaccactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggatactttatccacccagggttgggggtgggagggcagaaacatcttccagaccactg 260
Query: 61 aagccgtgaccctccagtgggtctgctcttagccactacatgccacgtatatagatacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagccgtgaccctccagtgggtctgctcttagccactacatgccacgtatatagatacct 320
Query: 121 ggaggctttctcaaaagcgaaagcaagaatagacataggcattacacaagacaattacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaggctttctcaaaagcgaaagcaagaatagacataggcattacacaagacaattacca 380
Query: 181 gccgtatcatacatctcaggtcaggtgtcttggaagtctggaagttcccacccaatgcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccgtatcatacatctcaggtcaggtgtcttggaagtctggaagttcccacccaatgcac 440
Query: 241 ctaatgtgctcagattgcaaaaattgaattcactattttgtttgtttgtttttcgagaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaatgtgctcagattgcaaaaattgaattcactattttgtttgtttgtttttcgagaca 500
Query: 301 gggtttctctgtatagccctggctgtcctggaactcactttgtagaccaggctgtcctgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggtttctctgtatagccctggctgtcctggaactcactttgtagaccaggctgtcctgg 560
Query: 361 aactcagaaatccacctgcctttgcctcccgagtgctgggattaaaggagtgtgccacca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aactcagaaatccacctgcctttgcctcccgagtgctgggattaaaggagtgtgccacca 620
Query: 421 cgcccggcatggattcactattttttaaaaactctttatttgttataatttgggtacaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cgcccggcatggattcactattttttaaaaactctttatttgttataatttgggtacaga 680
Query: 481 gtaaagaataaagttctgaaagtggggacacttacatctttctgctgtgtgtcagtgttt 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtagagaataaagttctgaaagtggggacacttacatctttctgctgtgtgtcagtgttt 740
Query: 541 atcatga 547
|||||||
Sbjct: 741 atcatga 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_a03.g1 MSMg01no349_a03.g1 CHROMAT_FILE:
MSMg01no349_a03.g1 PHD_FILE: MSMg01no349_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:30 2005
(600 letters)
>mm_chr10_28764795_28765788
Length = 994
Score = 799 bits (413), Expect = 0.0
Identities = 450/469 (95%), Gaps = 12/469 (2%)
Strand = Plus / Minus
Query: 132 ttggagtaaagaatgatgtcaaattatattaataattaattaatcaattgatattgatat 191
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 994 ttggagtaaagaatgatgtcaaattatattaataattaattaatca------attgatat 941
Query: 192 attgaaaagactactaaaagcaatctaaatgactggcatacattgggctatgcctggctt 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 attgaaaagactactaaaagcaatctaaatgactggcatacattgggctatgcctggctt 881
Query: 252 tttacatgagcactgagatgagtattcaagcctgcatgcacgcacagtaagcactagtac 311
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 880 tttacatgagcactgagatgagtattcaagcttgcatgcacgcacagtaagcactagtac 821
Query: 312 atattgagccacctccccagcaccaatgtgtgcatttttgtagtcatatactttatgaat 371
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 820 atattgagccacctccccagcaccactgtgtgcatttttatagtcatatactttatgaat 761
Query: 372 gcaaaaccaattctgcagtatttatctgaaataagtaaaatctgcagatattttattttg 431
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 760 gcaaaaccaattctgcagtatttatatgaaataagtacaatctgcagatattttattttg 701
Query: 432 tgaatattttgaacaatacataacaattacaattctctattattaatatatgacctttaa 491
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 700 tgaatattttgaacaatacata------acaattctctattattaatatatgacctttaa 647
Query: 492 aacagccaacaagagattctttgttcatatccagatttttgccatactccattcttaatt 551
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 646 aacagccaacaagagattctttgttcatatccaaatttttgccatactccattcttaatt 587
Query: 552 tgatctacagtctgtgaaacagtcatctcattttgagtagtaatgacag 600
||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tgatctacaatctgtgaaacagtcatctcattttgagtagtaatgacag 538
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 994
Length adjustment: 10
Effective length of query: 590
Effective length of database: 984
Effective search space: 580560
Effective search space used: 580560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
