BAC Information

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BAC

Clone NameMSMg01-349D21
Chromosome10 (Build37)
Map Location 12,947,903 - 13,069,868
singlet/doubletdoublet
Overlap genePhactr2
Upstream geneUtrn, LOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829
Downstream geneLOC100039475, Fuca2, Pex3, Deadc1, Aig1, EG666859, Hivep2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349D21.T7 (MSMg01no349_d21.b1)MSMg01-349D21.TJ (MSMg01no349_d21.g1)
ACCAG461145AG461146
length755788
length of high quality
(start - end)		478 (38 - 515)398 (74 - 471)
definitionCHROMAT_FILE: MSMg01no349_d21.b1 PHD_FILE: MSMg01no349_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:48 2005CHROMAT_FILE: MSMg01no349_d21.g1 PHD_FILE: MSMg01no349_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,069,452 - 13,069,868)(12,947,903 - 12,948,300)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACA
GTATGACCTAAACTGGATGTAGTGATATGTGCCTGTAATCCCAACACCTA
AGAAACAGAGATAAGAAGATCAGAAGTTCACAGGTTATCCTTGGCTACAC
GAGAGTTTGAGGTCAGCTGCAGCTACATGAGCTCTCAAAACAAACAAACA
AACAAAAAACCCCTGAGAATTCCCATCTGTTAATATTGTGTCAGTATAAT
TAAATGGCATCATGAATTTTGGAGGGGACAAATATTCTAACTAGAGCAAC
ACATGAAGACAGAGCCAAGTATTTCAGCAATGCCCAGATACTACAGAGTG
TCAGAAGTCAGCAGAAGAGGAGATGACATCAGGATGGATCGCCTACCTTT
AGAAGGAGCATAGCTTTTCACCTCTGTCATCCAGAACTAGGAAAGAGTGA
CTGGCTCTCATTACTGAAGTTTGCGATCTACTGTTATGACAGCCACAGGA
GACTACTAATATACACAGCTTGGGTGAAGCACAGNCCTGTACTTTCTGAT
TTCCTCTGAAGAATGCCTAGATATTTGTTCCTTANGTTATGGAATAAGAG
AAGAGAAAGGCACCTTTTGAAGCTCTGCCTTTGGAGGGCTAAAATGATTG
TGGTGTGGATAGAATTTGTGTACCTCCCAAGCCCCCAATTGAGGTTCCAG
CTTTAAAAGGGAGGACCCAAAGGGGACCTAATTTTGGAAAAAAATACAGG
CCCGG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCCCTACAAACTTGTAAGCATTCTAT
ATCACTGATGTAAGCCAGTAACTTTGGACTGCTTTGTCACATGACAGTTA
ATAACCTAAATGATATTCTGAGCTGACACAGAGGCCCAGCTCTTGTGACC
TACTGGATACCAAACATGCATTGAGTCATTAAGTTGAAACCACCCATAAT
CCTTCACGTCATACATCCATCCAATAAAGTGCTTCATGTCCATGTGTGTG
CTGGTTTGTATTTAGAAGTCATAGATCAGTAGTAATGTGTAACCACATAG
CAACAAGTGTTAACACAGCAGGAGACACTCATTTGTCCAATTATGGAACC
AAGTGCTCACTTCCAAAATTTACTCGGTAAGGACCCACTTTAATTCTGTC
AGTTACTACCTTGGAAGAAAGAAGATTTCTCAGGGGTTCAAAAGAAGAAA
ATTTATACCTTTTGTATTAACAAGATACACAGGGTATAAACATAACTACT
GCTTTTTTTTAAAGAAAGAATAGATCCTAGGCCTAATAATTCTCTAAGTG
TAACTGGGGGTTGGTTTTGTTTAAAAAAAAAAAAAAGGGCTGAAGTGGGG
GGAATGCCCCCCCTGCTGCTAAGTTGGGCTACCAAAGGGGGAACACTCCC
CTCTAACTACCCCTAAAAAGAACAAGGGTAGTCCCCTCCATCCCTGGAAG
TCCCCCCGTATCCCTCTTCCTGGGGGGTTTTCTTACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_d21.b1 MSMg01no349_d21.b1 CHROMAT_FILE:
MSMg01no349_d21.b1 PHD_FILE: MSMg01no349_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:48 2005
         (478 letters)



>mm_chr10_13068991_13069868
          Length = 878

 Score =  799 bits (413), Expect = 0.0
 Identities = 416/417 (99%)
 Strand = Plus / Minus

                                                                       
Query: 62  taagaaacagagataagaagatcagaagttcacaggttatccttggctacacgagagttt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 taagaaacagagataagaagatcagaagttcacaggttatccttggctacacgagagttt 819

                                                                       
Query: 122 gaggtcagctgcagctacatgagctctcaaaacaaacaaacaaacaaaaaacccctgaga 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 gaggtcagctgcagctacatgagctctcaaaacaaacaaacaaacaaaaaacccctgaga 759

                                                                       
Query: 182 attcccatctgttaatattgtgtcagtataattaaatggcatcatgaattttggagggga 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 attcccatctgttaatattgtgtcagtataattaaatggcatcatgaattttggagggga 699

                                                                       
Query: 242 caaatattctaactagagcaacacatgaagacagagccaagtatttcagcaatgcccaga 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 caaatattctaactagagcaacacatgaagacagagccaagtatttcagcaatgcccaga 639

                                                                       
Query: 302 tactacagagtgtcagaagtcagcagaagaggagatgacatcaggatggatcgcctacct 361
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 638 tactacagagtgtcagaagtcagcagaagaggagatgacatcaggatggatcacctacct 579

                                                                       
Query: 362 ttagaaggagcatagcttttcacctctgtcatccagaactaggaaagagtgactggctct 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ttagaaggagcatagcttttcacctctgtcatccagaactaggaaagagtgactggctct 519

                                                                    
Query: 422 cattactgaagtttgcgatctactgttatgacagccacaggagactactaatataca 478
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 cattactgaagtttgcgatctactgttatgacagccacaggagactactaatataca 462


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no349_d21.g1 MSMg01no349_d21.g1 CHROMAT_FILE:
MSMg01no349_d21.g1 PHD_FILE: MSMg01no349_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:48 2005
         (398 letters)



>mm_chr10_12947703_12948500
          Length = 798

 Score =  700 bits (362), Expect = 0.0
 Identities = 389/398 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccctacaaacttgtaagcattctatatcactgatgtaagccagtaactttggactgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctccctacaaacttgtaagcattctatatcactgatgtaagccagtaactttggactgct 260

                                                                       
Query: 61  ttgtcacatgacagttaataacctaaatgatattctgagctgacacagaggcccagctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtcacatgacagttaataacctaaatgatattctgagctgacacagaggcccagctct 320

                                                                       
Query: 121 tgtgacctactggataccaaacatgcattgagtcattaagttgaaaccacccataatcct 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgacctactggataccaaacgtgcattgagtcattaagttgaaaccacccataatcct 380

                                                                       
Query: 181 tcacgtcatacatccatccaataaagtgcttcatgtccatgtgtgtgctggtttgtattt 240
           ||| ||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 381 tcatgtcatccatccatccaataaagtgcttcatttccatgggtgtgctggtttgtattt 440

                                                                       
Query: 241 agaagtcatagatcagtagtaatgtgtaaccacatagcaacaagtgttaacacagcagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaagtcatagatcagtagtaatgtgtaaccacatagcaacaagtgttaacacagcagga 500

                                                                       
Query: 301 gacactcatttgtccaattatggaaccaagtgctcacttccaaaatttactcggtaagga 360
           ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 gacactcatttatccaattatggaaccaagtgctcacttctaaaatttactcggtaagga 560

                                                 
Query: 361 cccactttaattctgtcagttactaccttggaagaaag 398
           ||||||| |||||||||||||||||| |||||||||||
Sbjct: 561 cccacttcaattctgtcagttactactttggaagaaag 598


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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